File Info
- Filename
- aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c81b9ef65fb148a171f44658d03d72/aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.fusions.csv
- Size
- 8.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| GSG1L--AJ003147.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:27807487#chr16:3224569,reading-frame: out-of-frame,type: inversion,split_reads1: 70,split_reads2: 46,discordant_mates: 0,coverage1: 348,coverage2: 578,confidence: high | position: chr16:27807487:-#chr16:3224569:+,junction_reads: 124,spanning_reads: 0,ffmp: 0.4178 | |
| ABAT--GSG1L | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:8674711#chr16:27884638,reading-frame: .,type: inversion,split_reads1: 5,split_reads2: 67,discordant_mates: 0,coverage1: 2705,coverage2: 407,confidence: high | position: chr16:8674711:+#chr16:27884638:-,junction_reads: 76,spanning_reads: 0,ffmp: 0.256 | |
| CCDC189--MROH1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:30759012#chr8:144258777,reading-frame: out-of-frame,type: translocation,split_reads1: 25,split_reads2: 44,discordant_mates: 0,coverage1: 818,coverage2: 2499,confidence: high | position: chr16:30759012:-#chr8:144258777:+,junction_reads: 72,spanning_reads: 0,ffmp: 0.2426 | |
| ZC3HAV1--CNTNAP2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:139073856#chr7:148383649,reading-frame: out-of-frame,type: inversion,split_reads1: 37,split_reads2: 6,discordant_mates: 0,coverage1: 1042,coverage2: 104,confidence: high | position: chr7:139073856:-#chr7:148383649:+,junction_reads: 60,spanning_reads: 0,ffmp: 0.2021 | |
| XRN2--GRM7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:21339088#chr3:7680049,reading-frame: in-frame,type: translocation,split_reads1: 17,split_reads2: 15,discordant_mates: 1,coverage1: 1214,coverage2: 154,confidence: high | position: chr20:21339088:+#chr3:7680049:+,junction_reads: 40,spanning_reads: 1,ffmp: 0.1382 | |
| LRMDA--ADK | Mitelman | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500) | position: chr10:75438494#chr10:74314667,reading-frame: in-frame,type: duplication,split_reads1: 21,split_reads2: 15,discordant_mates: 0,coverage1: 1073,coverage2: 2334,confidence: high | position: chr10:75438494:+#chr10:74314667:+,junction_reads: 36,spanning_reads: 0,ffmp: 0.1213 |
| CUL1--RBMS3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:148767749#chr3:28576273,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 16,discordant_mates: 0,coverage1: 858,coverage2: 128,confidence: high | position: chr7:148767749:+#chr3:28576273:+,junction_reads: 30,spanning_reads: 0,ffmp: 0.1011 | |
| EZH1--TBC1D16 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:42745011:-#chr17:79952818:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.0842 | ||
| TCF4--HNRNPA1P57 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:55284287:-#chr2:41156597:+,junction_reads: 21,spanning_reads: 0,ffmp: 0.0707 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 16,spanning_reads: 0,ffmp: 0.0519 | ||
| N4BP2L2--LITAFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:32535769:-#chr16:8883210:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| SUCLG2-AS1--PTPRG | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:67671004#chr3:62255124,reading-frame: .,type: duplication,split_reads1: 0,split_reads2: 16,discordant_mates: 1,coverage1: 1,coverage2: 611,confidence: high | position: chr3:67671004:+#chr3:62255124:+,junction_reads: 11,spanning_reads: 1,ffmp: 0.0405 | |
| GBE1--FOXP1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:81642781#chr3:71198392,reading-frame: out-of-frame,type: deletion,split_reads1: 8,split_reads2: 2,discordant_mates: 0,coverage1: 1088,coverage2: 294,confidence: high | position: chr3:81642781:-#chr3:71198392:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0074 | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 50,split_reads2: 29,discordant_mates: 0,coverage1: 1847,coverage2: 339,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 43,split_reads2: 24,discordant_mates: 0,coverage1: 464,coverage2: 273,confidence: high | |
| CCDC169--SOHLH2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:36248606#chr13:36202093,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 19,split_reads2: 27,discordant_mates: 0,coverage1: 209,coverage2: 113,confidence: high | ||
| SUCLG2--CNTN3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:67518247#chr3:74624856,reading-frame: out-of-frame,type: duplication,split_reads1: 23,split_reads2: 17,discordant_mates: 0,coverage1: 1693,coverage2: 26,confidence: high | ||
| SUCLG2--NIPA2P2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:67518247#chr3:74624856,reading-frame: out-of-frame,type: duplication,split_reads1: 23,split_reads2: 17,discordant_mates: 0,coverage1: 1693,coverage2: 26,confidence: high | ||
| CMTM8--RN7SL120P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:32357546#chr3:1091861,reading-frame: out-of-frame,type: inversion,split_reads1: 29,split_reads2: 7,discordant_mates: 2,coverage1: 1114,coverage2: 11,confidence: high | ||
| CMTM8--CNTN6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:32357546#chr3:1091861,reading-frame: out-of-frame,type: inversion,split_reads1: 29,split_reads2: 7,discordant_mates: 2,coverage1: 1114,coverage2: 11,confidence: high | ||
| AKAP10--KCNU1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:19962840#chr8:36981786,reading-frame: out-of-frame,type: translocation,split_reads1: 24,split_reads2: 8,discordant_mates: 2,coverage1: 674,coverage2: 13,confidence: high | ||
| AKAP10--AC090453.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:19962840#chr8:36981786,reading-frame: out-of-frame,type: translocation,split_reads1: 24,split_reads2: 8,discordant_mates: 2,coverage1: 674,coverage2: 13,confidence: high | ||
| ZNF267--SPECC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:31885256#chr17:20024468,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 13,split_reads2: 8,discordant_mates: 0,coverage1: 1380,coverage2: 10,confidence: high | ||
| PCDHA3--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 13,discordant_mates: 0,coverage1: 143,coverage2: 483,confidence: high | ||
| PCDHA3--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 13,discordant_mates: 0,coverage1: 143,coverage2: 483,confidence: high | ||
| PCDHA3--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140803591#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 13,discordant_mates: 0,coverage1: 143,coverage2: 483,confidence: high | ||
| HSD17B7P2--RAD18 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:38365629#chr3:8941274,reading-frame: .,type: translocation/5'-5',split_reads1: 16,split_reads2: 2,discordant_mates: 1,coverage1: 352,coverage2: 6,confidence: high | ||
| TDRD1--HECTD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:114199317#chr10:91525149,reading-frame: out-of-frame,type: inversion,split_reads1: 13,split_reads2: 2,discordant_mates: 0,coverage1: 91,coverage2: 3,confidence: high | ||
| TDRD1--RPS27P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:114199317#chr10:91525149,reading-frame: out-of-frame,type: inversion,split_reads1: 13,split_reads2: 2,discordant_mates: 0,coverage1: 91,coverage2: 3,confidence: high | ||
| IKZF2--LINC01953 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213147708#chr2:213159281,reading-frame: out-of-frame,type: duplication,split_reads1: 8,split_reads2: 7,discordant_mates: 0,coverage1: 2485,coverage2: 11,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 131,coverage2: 483,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 131,coverage2: 483,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 131,coverage2: 483,confidence: high | ||
| AP3M2--NRG1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:42158112#chr8:32210037,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 7,split_reads2: 1,discordant_mates: 0,coverage1: 380,coverage2: 1,confidence: high |
36 rows