File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/dff8464fecc557cb0cc50a111bc405/.command.log
Size
7.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ffd2af-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/8ec2704d56a7baaa6038de70dc553b/aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/dff8464fecc557cb0cc50a111bc405/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/dff8464fecc557cb0cc50a111bc405/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/d11d63d352ba0ce79a10dd10a33bc3/aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
RDH10--SPAG1
starfusion
arriba
KIAA1109--SPATA5
starfusion
arriba
DPH1--PIK3R6
starfusion
arriba
ZCCHC14--IGH-@-ext
starfusion
PIK3CA--TBC1D32
starfusion
arriba
ARSG--DPH1
starfusion
arriba
UAP1--INO80
starfusion
arriba
SPATA5--DCHS2
starfusion
arriba
MEIS2--SEMA3D
starfusion
arriba
CDK19--ROS1
starfusion
arriba
EXOC4--TMEM212-AS1
starfusion
arriba
CEP43--ERBB4
starfusion
AC060809.1--ERBB4
starfusion
SPIDR--ZNF595
starfusion
SKIL--NCEH1
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
MEIS2--LINC02490
arriba
MEIS2--AC066614.1
arriba
DECR1--DPYS
arriba
DECR1--AP002847.1
arriba
EXOC4--NUP205
arriba
TVP23C--CDRT4
arriba
FAM227B--SEMA3D
arriba
TUBGCP2--AC104640.2
arriba
TUBGCP2--AC117434.1
arriba
HSPD1--AC068489.1
arriba
HSPD1--LLPHP3
arriba
MEIS2--FAM227B
arriba
SHANK2--AC104042.1
arriba
SHANK2--AC061997.1
arriba
BMP2K--PTPRT
arriba

  0%|          | 0/33 [00:00<?, ?it/s]
Processing RDH10--SPAG1:   0%|          | 0/33 [00:00<?, ?it/s]
Processing RDH10--SPAG1:   3%|▎         | 1/33 [00:00<00:03,  8.85it/s]
Processing KIAA1109--SPATA5:   3%|▎         | 1/33 [00:00<00:03,  8.85it/s]
Processing KIAA1109--SPATA5:   6%|▌         | 2/33 [00:00<00:03,  9.16it/s]
Processing DPH1--PIK3R6:   6%|▌         | 2/33 [00:00<00:03,  9.16it/s]    
Processing DPH1--PIK3R6:   9%|▉         | 3/33 [00:00<00:03,  9.27it/s]
Processing ZCCHC14--IGH-@-ext:   9%|▉         | 3/33 [00:00<00:03,  9.27it/s]
Processing ZCCHC14--IGH-@-ext:  12%|█▏        | 4/33 [00:00<00:03,  9.32it/s]
Processing PIK3CA--TBC1D32:  12%|█▏        | 4/33 [00:00<00:03,  9.32it/s]   
Processing PIK3CA--TBC1D32:  15%|█▌        | 5/33 [00:00<00:02,  9.35it/s]
Processing ARSG--DPH1:  15%|█▌        | 5/33 [00:00<00:02,  9.35it/s]     
Processing ARSG--DPH1:  18%|█▊        | 6/33 [00:00<00:02,  9.37it/s]
Processing UAP1--INO80:  18%|█▊        | 6/33 [00:00<00:02,  9.37it/s]
Processing UAP1--INO80:  21%|██        | 7/33 [00:00<00:02,  9.38it/s]
Processing SPATA5--DCHS2:  21%|██        | 7/33 [00:00<00:02,  9.38it/s]
Processing SPATA5--DCHS2:  24%|██▍       | 8/33 [00:00<00:02,  9.38it/s]
Processing MEIS2--SEMA3D:  24%|██▍       | 8/33 [00:00<00:02,  9.38it/s]
Processing MEIS2--SEMA3D:  27%|██▋       | 9/33 [00:00<00:02,  9.39it/s]
Processing CDK19--ROS1:  27%|██▋       | 9/33 [00:00<00:02,  9.39it/s]  
Processing CDK19--ROS1:  30%|███       | 10/33 [00:01<00:02,  9.39it/s]
Processing EXOC4--TMEM212-AS1:  30%|███       | 10/33 [00:01<00:02,  9.39it/s]
Processing EXOC4--TMEM212-AS1:  33%|███▎      | 11/33 [00:01<00:02,  9.39it/s]
Processing CEP43--ERBB4:  33%|███▎      | 11/33 [00:01<00:02,  9.39it/s]      
Processing CEP43--ERBB4:  36%|███▋      | 12/33 [00:01<00:02,  9.40it/s]
Processing AC060809.1--ERBB4:  36%|███▋      | 12/33 [00:01<00:02,  9.40it/s]
Processing AC060809.1--ERBB4:  39%|███▉      | 13/33 [00:01<00:02,  9.40it/s]
Processing SPIDR--ZNF595:  39%|███▉      | 13/33 [00:01<00:02,  9.40it/s]    
Processing SPIDR--ZNF595:  42%|████▏     | 14/33 [00:01<00:02,  9.40it/s]
Processing SKIL--NCEH1:  42%|████▏     | 14/33 [00:01<00:02,  9.40it/s]  
Processing SKIL--NCEH1:  45%|████▌     | 15/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHA13:  45%|████▌     | 15/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHA13:  48%|████▊     | 16/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHAC1:  48%|████▊     | 16/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHAC1:  52%|█████▏    | 17/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHAC2:  52%|█████▏    | 17/33 [00:01<00:01,  9.40it/s]
Processing PCDHA10--PCDHAC2:  55%|█████▍    | 18/33 [00:01<00:01,  9.40it/s]
Processing MEIS2--LINC02490:  55%|█████▍    | 18/33 [00:01<00:01,  9.40it/s]
Processing MEIS2--LINC02490:  58%|█████▊    | 19/33 [00:02<00:01,  9.40it/s]
Processing MEIS2--AC066614.1:  58%|█████▊    | 19/33 [00:02<00:01,  9.40it/s]
Processing MEIS2--AC066614.1:  61%|██████    | 20/33 [00:02<00:01,  9.40it/s]
Processing DECR1--DPYS:  61%|██████    | 20/33 [00:02<00:01,  9.40it/s]      
Processing DECR1--DPYS:  64%|██████▎   | 21/33 [00:02<00:01,  9.40it/s]
Processing DECR1--AP002847.1:  64%|██████▎   | 21/33 [00:02<00:01,  9.40it/s]
Processing DECR1--AP002847.1:  67%|██████▋   | 22/33 [00:02<00:01,  9.40it/s]
Processing EXOC4--NUP205:  67%|██████▋   | 22/33 [00:02<00:01,  9.40it/s]    
Processing EXOC4--NUP205:  70%|██████▉   | 23/33 [00:02<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  70%|██████▉   | 23/33 [00:02<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  73%|███████▎  | 24/33 [00:02<00:00,  9.41it/s]
Processing FAM227B--SEMA3D:  73%|███████▎  | 24/33 [00:02<00:00,  9.41it/s]
Processing FAM227B--SEMA3D:  76%|███████▌  | 25/33 [00:02<00:00,  9.40it/s]
Processing TUBGCP2--AC104640.2:  76%|███████▌  | 25/33 [00:02<00:00,  9.40it/s]
Processing TUBGCP2--AC104640.2:  79%|███████▉  | 26/33 [00:02<00:00,  9.40it/s]
Processing TUBGCP2--AC117434.1:  79%|███████▉  | 26/33 [00:02<00:00,  9.40it/s]
Processing TUBGCP2--AC117434.1:  82%|████████▏ | 27/33 [00:02<00:00,  9.40it/s]
Processing HSPD1--AC068489.1:  82%|████████▏ | 27/33 [00:02<00:00,  9.40it/s]  
Processing HSPD1--AC068489.1:  85%|████████▍ | 28/33 [00:02<00:00,  9.40it/s]
Processing HSPD1--LLPHP3:  85%|████████▍ | 28/33 [00:02<00:00,  9.40it/s]    
Processing HSPD1--LLPHP3:  88%|████████▊ | 29/33 [00:03<00:00,  9.40it/s]
Processing MEIS2--FAM227B:  88%|████████▊ | 29/33 [00:03<00:00,  9.40it/s]
Processing MEIS2--FAM227B:  91%|█████████ | 30/33 [00:03<00:00,  9.40it/s]
Processing SHANK2--AC104042.1:  91%|█████████ | 30/33 [00:03<00:00,  9.40it/s]
Processing SHANK2--AC104042.1:  94%|█████████▍| 31/33 [00:03<00:00,  9.40it/s]
Processing SHANK2--AC061997.1:  94%|█████████▍| 31/33 [00:03<00:00,  9.40it/s]
Processing SHANK2--AC061997.1:  97%|█████████▋| 32/33 [00:03<00:00,  9.40it/s]
Processing BMP2K--PTPRT:  97%|█████████▋| 32/33 [00:03<00:00,  9.40it/s]      
Processing BMP2K--PTPRT: 100%|██████████| 33/33 [00:03<00:00,  9.38it/s]
Processing BMP2K--PTPRT: 100%|██████████| 33/33 [00:03<00:00,  9.38it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory