File Info
- Filename
- aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/dff8464fecc557cb0cc50a111bc405/aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.fusions.csv
- Size
- 8.3 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ffd2af-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| RDH10--SPAG1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:73295578#chr8:100240403,reading-frame: out-of-frame,type: deletion,split_reads1: 13,split_reads2: 47,discordant_mates: 0,coverage1: 540,coverage2: 776,confidence: high | position: chr8:73295578:+#chr8:100240403:+,junction_reads: 63,spanning_reads: 0,ffmp: 0.2869 | |
| KIAA1109--SPATA5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:122240353#chr4:123090579,reading-frame: out-of-frame,type: deletion,split_reads1: 21,split_reads2: 30,discordant_mates: 0,coverage1: 1871,coverage2: 501,confidence: high | position: chr4:122240353:+#chr4:123090579:+,junction_reads: 57,spanning_reads: 0,ffmp: 0.2596 | |
| DPH1--PIK3R6 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:2033842#chr17:8867670,reading-frame: out-of-frame,type: inversion,split_reads1: 51,split_reads2: 3,discordant_mates: 0,coverage1: 767,coverage2: 16,confidence: high | position: chr17:2033842:+#chr17:8867670:-,junction_reads: 57,spanning_reads: 0,ffmp: 0.2596 | |
| ZCCHC14--IGH-@-ext | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:87492178:-#chr14:105741892:+,junction_reads: 51,spanning_reads: 0,ffmp: 0.2312 | ||
| PIK3CA--TBC1D32 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:179148603#chr6:121091041,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 43,discordant_mates: 0,coverage1: 176,coverage2: 460,confidence: high | position: chr3:179148603:+#chr6:121091041:-,junction_reads: 50,spanning_reads: 0,ffmp: 0.2277 | |
| ARSG--DPH1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:68401450#chr17:2033505,reading-frame: in-frame,type: duplication,split_reads1: 14,split_reads2: 8,discordant_mates: 0,coverage1: 827,coverage2: 1880,confidence: high | position: chr17:68401450:+#chr17:2033505:+,junction_reads: 23,spanning_reads: 0,ffmp: 0.1047 | |
| UAP1--INO80 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:162566348#chr15:41096353,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 7,discordant_mates: 0,coverage1: 1222,coverage2: 406,confidence: high | position: chr1:162566348:+#chr15:41096353:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.082 | |
| SPATA5--DCHS2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:123090705#chr4:154377444,reading-frame: in-frame,type: inversion,split_reads1: 5,split_reads2: 10,discordant_mates: 0,coverage1: 395,coverage2: 90,confidence: high | position: chr4:123090705:+#chr4:154377444:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.082 | |
| MEIS2--SEMA3D | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:37083771#chr7:84999865,reading-frame: out-of-frame,type: translocation,split_reads1: 6,split_reads2: 6,discordant_mates: 0,coverage1: 508,coverage2: 156,confidence: high | position: chr15:37083771:-#chr7:84999865:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0546 | |
| CDK19--ROS1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:110746126#chr6:117311117,reading-frame: in-frame,type: duplication,split_reads1: 5,split_reads2: 4,discordant_mates: 0,coverage1: 741,coverage2: 113,confidence: high | position: chr6:110746126:-#chr6:117311117:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0455 | |
| EXOC4--TMEM212-AS1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:133895735#chr3:171876396,reading-frame: out-of-frame,type: translocation,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 519,coverage2: 3,confidence: high | position: chr7:133895735:+#chr3:171876396:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.041 | |
| CEP43--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:167050315:+#chr2:211788159:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0205 | ||
| AC060809.1--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:81427545:+#chr2:211788159:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0205 | ||
| SPIDR--ZNF595 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:47294030:+#chr4:59430:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0364 | ||
| SKIL--NCEH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:170391260#chr3:172631396,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 60,split_reads2: 4,discordant_mates: 0,coverage1: 2298,coverage2: 15,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 31,discordant_mates: 0,coverage1: 851,coverage2: 1109,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 31,discordant_mates: 0,coverage1: 851,coverage2: 1109,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 31,discordant_mates: 0,coverage1: 851,coverage2: 1109,confidence: high | ||
| MEIS2--LINC02490 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:37083771#chr15:53351295,reading-frame: out-of-frame,type: duplication,split_reads1: 29,split_reads2: 11,discordant_mates: 0,coverage1: 508,coverage2: 15,confidence: high | ||
| MEIS2--AC066614.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:37083771#chr15:53351295,reading-frame: out-of-frame,type: duplication,split_reads1: 29,split_reads2: 11,discordant_mates: 0,coverage1: 508,coverage2: 15,confidence: high | ||
| DECR1--DPYS | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:90036940#chr8:104469727,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 681,coverage2: 17,confidence: high | ||
| DECR1--AP002847.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:90036940#chr8:104469727,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 681,coverage2: 17,confidence: high | ||
| EXOC4--NUP205 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:134048917#chr7:135571105,reading-frame: .,type: inversion/3'-3',split_reads1: 3,split_reads2: 18,discordant_mates: 0,coverage1: 9,coverage2: 770,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 15,discordant_mates: 0,coverage1: 691,coverage2: 238,confidence: high | |
| FAM227B--SEMA3D | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:49538461#chr7:84999865,reading-frame: .,type: translocation/3'-3',split_reads1: 1,split_reads2: 15,discordant_mates: 0,coverage1: 1,coverage2: 156,confidence: high | ||
| TUBGCP2--AC104640.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:133293562#chr3:176108870,reading-frame: out-of-frame,type: translocation,split_reads1: 8,split_reads2: 4,discordant_mates: 0,coverage1: 1185,coverage2: 11,confidence: high | ||
| TUBGCP2--AC117434.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:133293562#chr3:176108870,reading-frame: out-of-frame,type: translocation,split_reads1: 8,split_reads2: 4,discordant_mates: 0,coverage1: 1185,coverage2: 11,confidence: high | ||
| HSPD1--AC068489.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:197497140#chr2:221736674,reading-frame: out-of-frame,type: inversion,split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 1662,coverage2: 8,confidence: high | ||
| HSPD1--LLPHP3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:197497140#chr2:221736674,reading-frame: out-of-frame,type: inversion,split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 1662,coverage2: 8,confidence: high | ||
| MEIS2--FAM227B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:37083771#chr15:49538285,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 6,split_reads2: 5,discordant_mates: 0,coverage1: 508,coverage2: 7,confidence: high | ||
| SHANK2--AC104042.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:70798443#chr11:37039150,reading-frame: out-of-frame,type: deletion,split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 752,coverage2: 23,confidence: high | ||
| SHANK2--AC061997.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:70798443#chr11:37039150,reading-frame: out-of-frame,type: deletion,split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 752,coverage2: 23,confidence: high | ||
| BMP2K--PTPRT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:78776721#chr20:42634357,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 6,split_reads2: 3,discordant_mates: 0,coverage1: 2451,coverage2: 6,confidence: high |
34 rows