File Info

Filename
aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/ecd63ceaf43bd9fcd272defa4d665a/aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:39:57
                             Started mapping on |	Jun 08 07:42:03
                                    Finished on |	Jun 08 08:39:58
       Mapping speed, Million of reads per hour |	307.50

                          Number of input reads |	296820409
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283370105
                        Uniquely mapped reads % |	95.47%
                          Average mapped length |	244.84
                       Number of splices: Total |	307923802
            Number of splices: Annotated (sjdb) |	304515425
                       Number of splices: GT/AG |	305211778
                       Number of splices: GC/AG |	2041689
                       Number of splices: AT/AC |	190367
               Number of splices: Non-canonical |	479968
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.50
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8919639
             % of reads mapped to multiple loci |	3.01%
        Number of reads mapped to too many loci |	269023
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	443406
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	1885026
                 % of reads unmapped: too short |	0.64%
                Number of reads unmapped: other |	199726
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3090301
                            % of chimeric reads |	1.04%