File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ba052c17a74b7c04f15e4b4baa46ee/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-607ec3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/c69e36431af8d16f8dd1939d04a44f/aih-tih-sc-607ec3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ba052c17a74b7c04f15e4b4baa46ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ba052c17a74b7c04f15e4b4baa46ee/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c7c3ebcafd303e41b7f5dbfe14ff04/aih-tih-sc-607ec3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/3 [00:00<?, ?it/s]TLK2P1--AC110079.1
starfusion
TLK2--LINC01347
starfusion
TVP23C--CDRT4
arriba

Processing TLK2P1--AC110079.1:   0%|          | 0/3 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 1/3 [00:00<00:00,  9.12it/s]
Processing TLK2--LINC01347:  33%|███▎      | 1/3 [00:00<00:00,  9.12it/s]   
Processing TLK2--LINC01347:  67%|██████▋   | 2/3 [00:00<00:00,  9.35it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.35it/s]  
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.43it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.38it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory