Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/4421cb359ff1d1c55fa27b91711bdd/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/20f1e6f64d11cedd28e0cb32178d28/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/20f1e6f64d11cedd28e0cb32178d28/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/98e082f27cd2c645140863f7479a24/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (12528339) splicing reads. 252745 splicing junctions. 185442 known splicing junctions. 67303 novel splicing junctions.
sampling 10% (25056679) splicing reads. 306130 splicing junctions. 198150 known splicing junctions. 107980 novel splicing junctions.
sampling 15% (37585018) splicing reads. 344423 splicing junctions. 204985 known splicing junctions. 139438 novel splicing junctions.
sampling 20% (50113358) splicing reads. 374165 splicing junctions. 209438 known splicing junctions. 164727 novel splicing junctions.
sampling 25% (62641698) splicing reads. 398199 splicing junctions. 212807 known splicing junctions. 185392 novel splicing junctions.
sampling 30% (75170037) splicing reads. 418278 splicing junctions. 215301 known splicing junctions. 202977 novel splicing junctions.
sampling 35% (87698377) splicing reads. 435347 splicing junctions. 217312 known splicing junctions. 218035 novel splicing junctions.
sampling 40% (100226717) splicing reads. 449737 splicing junctions. 218823 known splicing junctions. 230914 novel splicing junctions.
sampling 45% (112755056) splicing reads. 462668 splicing junctions. 220152 known splicing junctions. 242516 novel splicing junctions.
sampling 50% (125283396) splicing reads. 473666 splicing junctions. 221247 known splicing junctions. 252419 novel splicing junctions.
sampling 55% (137811736) splicing reads. 483354 splicing junctions. 222154 known splicing junctions. 261200 novel splicing junctions.
sampling 60% (150340075) splicing reads. 491839 splicing junctions. 222958 known splicing junctions. 268881 novel splicing junctions.
sampling 65% (162868415) splicing reads. 499081 splicing junctions. 223620 known splicing junctions. 275461 novel splicing junctions.
sampling 70% (175396755) splicing reads. 505382 splicing junctions. 224202 known splicing junctions. 281180 novel splicing junctions.
sampling 75% (187925094) splicing reads. 510848 splicing junctions. 224691 known splicing junctions. 286157 novel splicing junctions.
sampling 80% (200453434) splicing reads. 515545 splicing junctions. 225115 known splicing junctions. 290430 novel splicing junctions.
sampling 85% (212981774) splicing reads. 519393 splicing junctions. 225441 known splicing junctions. 293952 novel splicing junctions.
sampling 90% (225510113) splicing reads. 522811 splicing junctions. 225747 known splicing junctions. 297064 novel splicing junctions.
sampling 95% (238038453) splicing reads. 525404 splicing junctions. 225953 known splicing junctions. 299451 novel splicing junctions.
sampling 100% (250566793) splicing reads. 527362 splicing junctions. 226144 known splicing junctions. 301218 novel splicing junctions.
null device 
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