File Info

Filename
aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5e9ae93ab1d1f941b4127ed31c7649/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:43:20
                             Started mapping on |	Jun 08 07:45:18
                                    Finished on |	Jun 08 08:44:47
       Mapping speed, Million of reads per hour |	298.64

                          Number of input reads |	296063924
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284670147
                        Uniquely mapped reads % |	96.15%
                          Average mapped length |	250.97
                       Number of splices: Total |	324642016
            Number of splices: Annotated (sjdb) |	320785894
                       Number of splices: GT/AG |	321681256
                       Number of splices: GC/AG |	2179159
                       Number of splices: AT/AC |	249005
               Number of splices: Non-canonical |	532596
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6588770
             % of reads mapped to multiple loci |	2.23%
        Number of reads mapped to too many loci |	184198
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	552204
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2219416
                 % of reads unmapped: too short |	0.75%
                Number of reads unmapped: other |	176435
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3283681
                            % of chimeric reads |	1.11%