File Info

Filename
aih-tih-sc-e08fa3-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/96a3af0ffe7f857b51cd29d0d49504/aih-tih-sc-e08fa3-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:41:48
                             Started mapping on |	Jun 08 07:43:41
                                    Finished on |	Jun 08 08:47:02
       Mapping speed, Million of reads per hour |	280.45

                          Number of input reads |	296109161
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	276534431
                        Uniquely mapped reads % |	93.39%
                          Average mapped length |	251.33
                       Number of splices: Total |	317403415
            Number of splices: Annotated (sjdb) |	313757316
                       Number of splices: GT/AG |	314551529
                       Number of splices: GC/AG |	2101156
                       Number of splices: AT/AC |	273294
               Number of splices: Non-canonical |	477436
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	14588970
             % of reads mapped to multiple loci |	4.93%
        Number of reads mapped to too many loci |	243849
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	737869
       % of reads unmapped: too many mismatches |	0.25%
            Number of reads unmapped: too short |	2158394
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	244529
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3132976
                            % of chimeric reads |	1.06%