File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4c4ac6f1b24187d163808f1f5d5769/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 11 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 213
  Pass (FILTER=PASS): 17 (8.0%)
  Fail (FILTER=FAIL): 196 (92.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 11
  All 11 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 70
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 15
  confidence_below_min(low<high): 15
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 7
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
  confidence_below_min(medium<high);aih_curated_blacklist: 5
  confidence_below_min(low<high);aih_curated_blacklist: 3
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
  total_reads_below_min(6.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 17 pass, 2 fail (total: 19)
  low: 0 pass, 89 fail (total: 89)
  medium: 0 pass, 105 fail (total: 105)
Arriba filter: 213 rows -> 17 PASS; wrote aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt