File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/1f21b95777599bce11108152682b8b/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a97ce1-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/d615688a6500a250bfd1a94f1b7b9d/aih-tih-sc-a97ce1-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/1f21b95777599bce11108152682b8b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/6181e830a3639971b06d5383a93ecf/aih-tih-sc-a97ce1-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/1f21b95777599bce11108152682b8b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AC004980.3--UPK3BL1
starfusion
TLK2--AL669831.1
starfusion
PRCP--RAB30
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing AC004980.3--UPK3BL1:   0%|          | 0/7 [00:00<?, ?it/s]
Processing AC004980.3--UPK3BL1:  14%|█▍        | 1/7 [00:00<00:00,  8.89it/s]
Processing TLK2--AL669831.1:  14%|█▍        | 1/7 [00:00<00:00,  8.89it/s]   
Processing TLK2--AL669831.1:  29%|██▊       | 2/7 [00:00<00:00,  9.20it/s]
Processing PRCP--RAB30:  29%|██▊       | 2/7 [00:00<00:00,  9.20it/s]     
Processing PRCP--RAB30:  43%|████▎     | 3/7 [00:00<00:00,  9.27it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 3/7 [00:00<00:00,  9.27it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 4/7 [00:00<00:00,  9.31it/s]
Processing PCDHA11--PCDHAC1:  57%|█████▋    | 4/7 [00:00<00:00,  9.31it/s]
Processing PCDHA11--PCDHAC1:  71%|███████▏  | 5/7 [00:00<00:00,  9.32it/s]
Processing PCDHA11--PCDHAC2:  71%|███████▏  | 5/7 [00:00<00:00,  9.32it/s]
Processing PCDHA11--PCDHAC2:  86%|████████▌ | 6/7 [00:00<00:00,  9.27it/s]
Processing PCDHA11--PCDHA13:  86%|████████▌ | 6/7 [00:00<00:00,  9.27it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 7/7 [00:00<00:00,  9.30it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 7/7 [00:00<00:00,  9.27it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory