Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-28eb14-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:36:30.597 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:36:30 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-28eb14-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:36:30 GMT 2026] Executing as ?@nf-3056aea1795c385bfe838ce8a8900a7c-b6f83-zlv5g on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:36:30 MarkDuplicates Start of doWork freeMemory: 105829000; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:36:30 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:36:30 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,435,730
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 2654 as yet unmatched pairs. 661 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,186,680
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 4453 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:10,638,624
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 5668 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:15,725,432
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 7407 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:19,156,780
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 9063 as yet unmatched pairs. 331 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:21,884,577
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 10651 as yet unmatched pairs. 320 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:25,352,959
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 12527 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:27,668,225
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 17376 as yet unmatched pairs. 3836 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:31,919,012
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 16170 as yet unmatched pairs. 1050 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:35,358,925
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 17030 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:39,283,288
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 19072 as yet unmatched pairs. 734 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:42,195,019
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 20164 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:44,221,622
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 22098 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:51,403,459
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 23528 as yet unmatched pairs. 496 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:62,513,449
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 24661 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:87,103,415
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 26116 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:107,617,565
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 27915 as yet unmatched pairs. 792 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:109,253,356
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 31988 as yet unmatched pairs. 3337 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:110,043,832
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 30780 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:114,737,976
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 33271 as yet unmatched pairs. 1367 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:120,833,687
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 33702 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:146,128,187
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 34446 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:148,540,945
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 35637 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:149,784,058
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 35674 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:150,144,806
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 37069 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:150,816,309
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 38558 as yet unmatched pairs. 548 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:151,342,058
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 39585 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:152,307,651
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 41286 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:153,973,010
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 43615 as yet unmatched pairs. 1054 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:154,173,094
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 53751 as yet unmatched pairs. 9944 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:154,590,196
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 47869 as yet unmatched pairs. 2628 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:155,060,774
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 49327 as yet unmatched pairs. 2629 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,393
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 50827 as yet unmatched pairs. 2645 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,300
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 49515 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:155,659,913
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 51704 as yet unmatched pairs. 1156 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:156,130,618
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 57323 as yet unmatched pairs. 5178 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:156,261,360
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 54747 as yet unmatched pairs. 815 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,701,019
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 61131 as yet unmatched pairs. 5683 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:160,240,219
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 57983 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:161,171,846
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 59136 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:165,651,012
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 62601 as yet unmatched pairs. 2429 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,562
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 62424 as yet unmatched pairs. 830 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:175,160,849
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 63869 as yet unmatched pairs. 937 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:182,384,642
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 71059 as yet unmatched pairs. 6653 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:185,151,876
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 66338 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:193,029,581
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 67652 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:201,900,631
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 68678 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:203,165,884
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 71053 as yet unmatched pairs. 857 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:204,411,289
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 72454 as yet unmatched pairs. 777 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:207,757,075
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 75447 as yet unmatched pairs. 2317 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:213,242,231
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 74832 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:222,687,609
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 76593 as yet unmatched pairs. 695 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:225,844,523
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 78497 as yet unmatched pairs. 1207 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:228,097,604
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 80816 as yet unmatched pairs. 2066 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:229,299,037
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 81109 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,910
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 85918 as yet unmatched pairs. 3293 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,795
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 84822 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:248,853,937
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 85957 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr2:9,875,962
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 87590 as yet unmatched pairs. 84748 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:19,936,252
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 89054 as yet unmatched pairs. 86156 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:25,153,746
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 90597 as yet unmatched pairs. 87652 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:27,241,958
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 92073 as yet unmatched pairs. 89085 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:30,910,899
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 93726 as yet unmatched pairs. 90704 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,261
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 144512 as yet unmatched pairs. 87983 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 710294 as yet unmatched pairs. 55551 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 794668 as yet unmatched pairs. 50826 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:38,564,226
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 847666 as yet unmatched pairs. 47277 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:43,947,261
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 847698 as yet unmatched pairs. 47270 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:53,890,148
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 844885 as yet unmatched pairs. 44399 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:61,228,656
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 843572 as yet unmatched pairs. 43016 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:68,180,999
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 842444 as yet unmatched pairs. 41823 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:71,139,807
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 840876 as yet unmatched pairs. 40219 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:74,369,208
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 840090 as yet unmatched pairs. 39381 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:85,344,662
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 838171 as yet unmatched pairs. 37419 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:87,049,697
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 836567 as yet unmatched pairs. 35786 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:96,299,404
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 835338 as yet unmatched pairs. 34498 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:99,382,200
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 834221 as yet unmatched pairs. 33341 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:106,436,145
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 832503 as yet unmatched pairs. 31529 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:109,546,179
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 831591 as yet unmatched pairs. 30599 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:113,133,152
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 830918 as yet unmatched pairs. 29883 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:127,955,131
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 829703 as yet unmatched pairs. 28559 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:131,530,806
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 828754 as yet unmatched pairs. 27562 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:142,130,660
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 827368 as yet unmatched pairs. 26000 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:161,204,748
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 826215 as yet unmatched pairs. 24774 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:172,564,659
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 824499 as yet unmatched pairs. 22959 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:178,583,767
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 823115 as yet unmatched pairs. 21508 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:189,666,299
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 821832 as yet unmatched pairs. 20180 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:200,817,135
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 822814 as yet unmatched pairs. 21126 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:206,767,228
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 819417 as yet unmatched pairs. 17681 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,403
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 821489 as yet unmatched pairs. 19670 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,854
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 821920 as yet unmatched pairs. 20086 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,231
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 817904 as yet unmatched pairs. 16051 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:218,277,397
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 815103 as yet unmatched pairs. 13208 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:219,482,797
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 812638 as yet unmatched pairs. 10695 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:226,795,946
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 811767 as yet unmatched pairs. 9751 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:229,840,850
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 809987 as yet unmatched pairs. 7934 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:232,662,831
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 809855 as yet unmatched pairs. 7755 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,518,584
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 812215 as yet unmatched pairs. 10018 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:239,961,111
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 806857 as yet unmatched pairs. 4603 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:241,255,182
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 804703 as yet unmatched pairs. 2414 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,398
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 806289 as yet unmatched pairs. 48696 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:9,949,845
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 800151 as yet unmatched pairs. 42509 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr3:13,481,370
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 799210 as yet unmatched pairs. 41512 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:27,394,740
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 797438 as yet unmatched pairs. 39645 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:37,326,147
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 796572 as yet unmatched pairs. 38721 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:41,835,844
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 794867 as yet unmatched pairs. 36975 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr3:46,989,333
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 794098 as yet unmatched pairs. 36155 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:47,610,073
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 792080 as yet unmatched pairs. 34086 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:48,424,409
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 791028 as yet unmatched pairs. 32996 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,700
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 789309 as yet unmatched pairs. 31227 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:49,129,280
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 788996 as yet unmatched pairs. 30893 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:49,719,344
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 785531 as yet unmatched pairs. 27391 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:50,320,036
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 784128 as yet unmatched pairs. 25939 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:52,331,270
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 782145 as yet unmatched pairs. 23900 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:56,616,024
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 780680 as yet unmatched pairs. 22377 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:58,124,453
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 781916 as yet unmatched pairs. 23574 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:64,023,333
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 777951 as yet unmatched pairs. 19545 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,754
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 776984 as yet unmatched pairs. 18473 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:108,606,184
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 775572 as yet unmatched pairs. 17008 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:121,695,590
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 775026 as yet unmatched pairs. 16419 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:126,419,049
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 773005 as yet unmatched pairs. 14335 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:129,249,616
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 771723 as yet unmatched pairs. 13028 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:132,525,725
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 770226 as yet unmatched pairs. 11486 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:139,935,439
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 768908 as yet unmatched pairs. 10101 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:149,032,226
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 767741 as yet unmatched pairs. 8807 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:160,402,004
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 766024 as yet unmatched pairs. 7030 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:179,614,970
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 765569 as yet unmatched pairs. 6513 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:184,317,448
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 763973 as yet unmatched pairs. 4876 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:187,733,635
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 762338 as yet unmatched pairs. 3207 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:195,867,935
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 761156 as yet unmatched pairs. 1954 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr4:672,476
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 759553 as yet unmatched pairs. 26021 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:1,711,947
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 757441 as yet unmatched pairs. 23841 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:2,250,574
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 756131 as yet unmatched pairs. 22491 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr4:3,493,132
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 755180 as yet unmatched pairs. 21471 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:7,043,581
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 752705 as yet unmatched pairs. 18907 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:15,640,854
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 751579 as yet unmatched pairs. 17712 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:39,869,426
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 750130 as yet unmatched pairs. 16208 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:54,295,155
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 748321 as yet unmatched pairs. 14353 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:68,337,695
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 747220 as yet unmatched pairs. 13206 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:77,020,510
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 745608 as yet unmatched pairs. 11551 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:86,016,722
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 745283 as yet unmatched pairs. 11180 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:95,335,492
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 743196 as yet unmatched pairs. 9033 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:105,940,521
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 741996 as yet unmatched pairs. 7763 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:122,333,652
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 740758 as yet unmatched pairs. 6479 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:140,624,129
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 742915 as yet unmatched pairs. 8568 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:145,542,648
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 738042 as yet unmatched pairs. 3634 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:153,788,398
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 737115 as yet unmatched pairs. 2650 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:174,508,777
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 735325 as yet unmatched pairs. 825 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:1,814,354
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 733788 as yet unmatched pairs. 34757 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:14,479,992
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 732633 as yet unmatched pairs. 33567 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:35,065,694
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 733447 as yet unmatched pairs. 34315 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:43,609,259
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 729870 as yet unmatched pairs. 30689 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:56,885,930
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 728901 as yet unmatched pairs. 29671 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:69,419,941
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 727821 as yet unmatched pairs. 28527 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:73,498,479
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 728051 as yet unmatched pairs. 28717 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr5:80,654,688
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 725347 as yet unmatched pairs. 25969 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:96,770,585
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 724563 as yet unmatched pairs. 25109 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:116,291,519
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 723289 as yet unmatched pairs. 23777 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:132,761,478
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 721782 as yet unmatched pairs. 22224 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:136,177,460
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 720150 as yet unmatched pairs. 20560 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,781,954
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 720928 as yet unmatched pairs. 21306 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:139,680,621
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 718391 as yet unmatched pairs. 18714 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:141,096,396
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 715724 as yet unmatched pairs. 15988 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,635
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 715548 as yet unmatched pairs. 15789 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:149,505,510
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 715379 as yet unmatched pairs. 15583 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,446,801
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 713592 as yet unmatched pairs. 13771 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:151,746,378
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 711578 as yet unmatched pairs. 11722 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:163,456,929
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 708886 as yet unmatched pairs. 8984 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,159
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 717161 as yet unmatched pairs. 17232 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:175,521,968
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 706016 as yet unmatched pairs. 6041 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:177,466,771
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 704712 as yet unmatched pairs. 4701 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:179,719,729
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 703809 as yet unmatched pairs. 3764 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,874,947
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 701655 as yet unmatched pairs. 1575 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:3,410,247
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 699863 as yet unmatched pairs. 43361 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:7,566,377
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 698975 as yet unmatched pairs. 42438 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr6:12,121,431
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 696693 as yet unmatched pairs. 40118 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:25,500,182
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 695209 as yet unmatched pairs. 38585 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:26,545,423
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 693964 as yet unmatched pairs. 37312 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,457
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 692606 as yet unmatched pairs. 35936 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:30,889,334
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 693506 as yet unmatched pairs. 36800 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:31,625,239
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 690655 as yet unmatched pairs. 33912 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:31,732,384
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 688416 as yet unmatched pairs. 31652 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,927,976
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 686598 as yet unmatched pairs. 29812 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:32,828,810
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 685174 as yet unmatched pairs. 28372 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,295,997
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 684562 as yet unmatched pairs. 27732 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:34,417,478
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 685142 as yet unmatched pairs. 28276 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:36,210,243
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 680689 as yet unmatched pairs. 23774 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:42,097,808
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 678951 as yet unmatched pairs. 22001 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:43,179,107
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 678087 as yet unmatched pairs. 21091 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:44,231,432
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 676212 as yet unmatched pairs. 19184 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:53,134,103
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 674668 as yet unmatched pairs. 17487 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:75,113,235
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 673601 as yet unmatched pairs. 16365 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:82,495,983
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 672078 as yet unmatched pairs. 14794 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:97,246,629
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 670913 as yet unmatched pairs. 13595 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:110,893,514
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 669808 as yet unmatched pairs. 12437 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:125,257,096
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 669941 as yet unmatched pairs. 12521 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:136,345,953
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 667755 as yet unmatched pairs. 10304 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:144,458,885
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 665477 as yet unmatched pairs. 7994 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:151,618,036
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 663956 as yet unmatched pairs. 6430 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:151,944,234
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 671182 as yet unmatched pairs. 13611 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:158,503,323
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 660917 as yet unmatched pairs. 3280 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:163,455,402
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 659399 as yet unmatched pairs. 1724 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr7:754,627
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 658196 as yet unmatched pairs. 42606 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr7:2,571,607
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 656921 as yet unmatched pairs. 41275 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,230
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 654576 as yet unmatched pairs. 38869 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,542
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 658618 as yet unmatched pairs. 42826 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:11,636,579
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 650797 as yet unmatched pairs. 34962 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:16,794,957
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 710162 as yet unmatched pairs. 94307 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:17,796,895
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 648824 as yet unmatched pairs. 32956 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:30,615,945
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 647192 as yet unmatched pairs. 31294 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:44,036,720
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 645673 as yet unmatched pairs. 29746 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:45,610,390
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 645425 as yet unmatched pairs. 29450 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:66,004,038
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 642553 as yet unmatched pairs. 26525 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:73,198,756
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 642844 as yet unmatched pairs. 26792 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:74,711,082
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 642443 as yet unmatched pairs. 26348 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:75,538,215
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 639862 as yet unmatched pairs. 23750 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr7:76,303,827
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 651164 as yet unmatched pairs. 35001 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:82,953,721
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 636787 as yet unmatched pairs. 20568 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:92,398,389
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 636015 as yet unmatched pairs. 19774 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:98,917,488
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 634635 as yet unmatched pairs. 18368 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,098,044
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 632776 as yet unmatched pairs. 16463 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,707,015
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 631371 as yet unmatched pairs. 15025 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:102,489,051
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 629655 as yet unmatched pairs. 13267 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:103,086,708
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 629344 as yet unmatched pairs. 12940 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:117,099,760
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 628119 as yet unmatched pairs. 11667 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:128,338,125
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 626437 as yet unmatched pairs. 9964 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:135,616,692
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 625273 as yet unmatched pairs. 8746 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:140,007,115
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 623536 as yet unmatched pairs. 6994 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:143,757,177
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 622366 as yet unmatched pairs. 5800 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:149,722,436
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 621090 as yet unmatched pairs. 4489 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,217
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 620104 as yet unmatched pairs. 3471 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:155,738,338
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 617909 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr8:11,808,833
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 618419 as yet unmatched pairs. 77371 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr8:22,101,779
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 614817 as yet unmatched pairs. 73738 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr8:28,716,310
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 613258 as yet unmatched pairs. 72154 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:37,697,468
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 628886 as yet unmatched pairs. 87742 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,155
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 622120 as yet unmatched pairs. 80931 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:37,846,918
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 608781 as yet unmatched pairs. 67552 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:37,872,980
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 622546 as yet unmatched pairs. 81281 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:37,899,061
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 621014 as yet unmatched pairs. 79701 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,177,066
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 607708 as yet unmatched pairs. 66376 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr8:38,267,810
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 609839 as yet unmatched pairs. 68476 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr8:38,299,539
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 606674 as yet unmatched pairs. 65286 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,606
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 603570 as yet unmatched pairs. 62176 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:38,347,982
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 617953 as yet unmatched pairs. 76489 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 63s. Last read position: chr8:38,414,859
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 607992 as yet unmatched pairs. 66516 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr8:38,427,950
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 610058 as yet unmatched pairs. 68549 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,576
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 594630 as yet unmatched pairs. 53066 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,716
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 593120 as yet unmatched pairs. 51485 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr8:51,820,607
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 591113 as yet unmatched pairs. 49458 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:60,558,849
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 591882 as yet unmatched pairs. 50181 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:67,259,856
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 588726 as yet unmatched pairs. 46999 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:73,794,069
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 588028 as yet unmatched pairs. 46274 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:86,474,829
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 586656 as yet unmatched pairs. 44867 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:94,940,177
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 585213 as yet unmatched pairs. 43385 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 3s. Last read position: chr8:99,853,988
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 583713 as yet unmatched pairs. 41835 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr8:100,721,469
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 584776 as yet unmatched pairs. 42855 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:103,328,316
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 580725 as yet unmatched pairs. 38750 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:115,415,031
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 581737 as yet unmatched pairs. 39721 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:115,604,917
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 596888 as yet unmatched pairs. 54759 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:118,110,802
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 577001 as yet unmatched pairs. 34818 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:124,555,886
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 575580 as yet unmatched pairs. 33328 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:132,814,862
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 574122 as yet unmatched pairs. 31818 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,020,895
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 599551 as yet unmatched pairs. 57194 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,488,238
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 570869 as yet unmatched pairs. 28465 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,722,159
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 569783 as yet unmatched pairs. 27349 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,815,214
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 567142 as yet unmatched pairs. 24678 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,372
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 565963 as yet unmatched pairs. 23498 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,046
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 571689 as yet unmatched pairs. 29222 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,916
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 568384 as yet unmatched pairs. 25916 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,628
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 576109 as yet unmatched pairs. 33638 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,150
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 565767 as yet unmatched pairs. 23291 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,549
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 564287 as yet unmatched pairs. 21811 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,204
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 567107 as yet unmatched pairs. 24629 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,654
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 583390 as yet unmatched pairs. 40883 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,113
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 577495 as yet unmatched pairs. 34974 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,663
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 567116 as yet unmatched pairs. 24569 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,244
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 564854 as yet unmatched pairs. 22304 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,740
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 569984 as yet unmatched pairs. 27432 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,388
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 556772 as yet unmatched pairs. 14216 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,818
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 556457 as yet unmatched pairs. 13901 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,293
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 556529 as yet unmatched pairs. 13973 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,783
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 557122 as yet unmatched pairs. 14554 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr8:143,919,961
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 554870 as yet unmatched pairs. 12279 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,422
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 552106 as yet unmatched pairs. 9477 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:144,057,611
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 549632 as yet unmatched pairs. 6982 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:144,316,662
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 547983 as yet unmatched pairs. 5301 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:144,473,174
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 548932 as yet unmatched pairs. 6228 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:144,841,666
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 543662 as yet unmatched pairs. 916 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:6,007,700
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 541923 as yet unmatched pairs. 34350 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:21,818,169
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 540477 as yet unmatched pairs. 32768 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:34,257,751
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 538926 as yet unmatched pairs. 31181 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:35,713,245
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 537423 as yet unmatched pairs. 29656 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:65,289,675
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 535764 as yet unmatched pairs. 27950 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,938
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 535236 as yet unmatched pairs. 27384 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:91,410,439
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 533330 as yet unmatched pairs. 25455 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:94,800,839
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 531871 as yet unmatched pairs. 23955 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:105,299,239
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 530889 as yet unmatched pairs. 22938 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:112,262,484
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 530495 as yet unmatched pairs. 22512 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:114,504,226
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 527905 as yet unmatched pairs. 19904 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:123,103,092
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 525995 as yet unmatched pairs. 17979 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,611
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 524345 as yet unmatched pairs. 16305 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,050
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 523290 as yet unmatched pairs. 15207 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:128,633,932
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 521747 as yet unmatched pairs. 13639 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:129,828,034
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 519228 as yet unmatched pairs. 11097 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:131,475,041
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 518554 as yet unmatched pairs. 10393 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:133,364,956
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 517654 as yet unmatched pairs. 9457 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:136,292,657
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 514573 as yet unmatched pairs. 6338 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr9:136,502,002
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 513045 as yet unmatched pairs. 4784 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:137,039,831
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 515072 as yet unmatched pairs. 6771 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:137,457,525
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 509847 as yet unmatched pairs. 1519 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:5,652,816
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 508039 as yet unmatched pairs. 29376 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:8,064,019
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 510009 as yet unmatched pairs. 31313 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:18,545,830
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 504648 as yet unmatched pairs. 25896 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:27,122,959
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 503795 as yet unmatched pairs. 24990 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:32,033,844
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 504083 as yet unmatched pairs. 25249 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:38,016,995
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 501372 as yet unmatched pairs. 22501 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,574
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 501676 as yet unmatched pairs. 22782 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:59,814,719
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 500033 as yet unmatched pairs. 21125 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:69,392,236
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 497483 as yet unmatched pairs. 18527 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:73,766,420
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 496508 as yet unmatched pairs. 17503 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:77,821,259
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 495266 as yet unmatched pairs. 16212 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:84,141,472
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 494396 as yet unmatched pairs. 15306 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:89,402,362
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 492726 as yet unmatched pairs. 13602 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:94,402,566
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 490524 as yet unmatched pairs. 11382 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:98,392,555
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 488909 as yet unmatched pairs. 9726 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr10:101,579,798
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 487550 as yet unmatched pairs. 8349 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr10:102,656,982
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 487187 as yet unmatched pairs. 7972 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr10:110,894,462
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 488270 as yet unmatched pairs. 9027 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:116,929,987
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 486320 as yet unmatched pairs. 7043 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:122,087,485
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 481628 as yet unmatched pairs. 2328 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:132,405,202
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 481804 as yet unmatched pairs. 2470 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr11:315,103
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 478689 as yet unmatched pairs. 77422 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:556,334
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 477153 as yet unmatched pairs. 75855 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:830,652
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 477174 as yet unmatched pairs. 75861 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,228,698
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 473687 as yet unmatched pairs. 72362 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,199
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 473594 as yet unmatched pairs. 72260 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,735,324
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 478096 as yet unmatched pairs. 76753 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,379
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 481876 as yet unmatched pairs. 80511 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr11:3,824,309
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 468518 as yet unmatched pairs. 67126 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr11:7,466,809
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 466152 as yet unmatched pairs. 64744 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:10,802,101
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 466305 as yet unmatched pairs. 64871 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:17,312,090
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 463828 as yet unmatched pairs. 62359 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:33,141,627
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 462533 as yet unmatched pairs. 61036 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:43,838,317
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 461568 as yet unmatched pairs. 60045 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:46,665,444
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 459899 as yet unmatched pairs. 58358 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:47,813,033
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 457789 as yet unmatched pairs. 56231 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,815,929
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 456818 as yet unmatched pairs. 55241 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,242,265
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 471390 as yet unmatched pairs. 69777 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:62,270,989
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 505407 as yet unmatched pairs. 103771 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,460
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 453098 as yet unmatched pairs. 51448 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:62,881,177
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 451681 as yet unmatched pairs. 50003 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr11:64,824,424
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 449213 as yet unmatched pairs. 47514 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:65,630,409
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 447583 as yet unmatched pairs. 45809 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:66,625,297
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 445863 as yet unmatched pairs. 44080 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr11:67,254,871
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 447811 as yet unmatched pairs. 46012 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:67,365,377
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 442652 as yet unmatched pairs. 40812 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:67,498,214
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 440679 as yet unmatched pairs. 38809 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:68,750,437
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 440022 as yet unmatched pairs. 38130 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,413
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 480424 as yet unmatched pairs. 78511 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,880
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 485589 as yet unmatched pairs. 83658 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:69,651,183
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 464816 as yet unmatched pairs. 62870 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:70,407,546
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 432943 as yet unmatched pairs. 30970 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:72,024,316
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 430993 as yet unmatched pairs. 28991 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:72,228,826
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 430446 as yet unmatched pairs. 28433 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:72,692,762
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 428463 as yet unmatched pairs. 26433 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:72,755,045
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 451854 as yet unmatched pairs. 49790 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:72,780,975
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 449374 as yet unmatched pairs. 47277 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:73,297,005
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 422069 as yet unmatched pairs. 19938 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:74,852,004
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 420451 as yet unmatched pairs. 18293 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:75,566,743
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 420835 as yet unmatched pairs. 18662 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:76,535,912
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 417851 as yet unmatched pairs. 15625 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:77,323,263
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 420086 as yet unmatched pairs. 17834 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:77,876,873
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 413693 as yet unmatched pairs. 11420 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:78,101,116
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 430131 as yet unmatched pairs. 27838 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:78,173,824
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 412867 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:78,280,695
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 416356 as yet unmatched pairs. 14023 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:101,128,114
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 409198 as yet unmatched pairs. 6822 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:117,205,990
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 406411 as yet unmatched pairs. 4004 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:119,277,801
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 404945 as yet unmatched pairs. 2522 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:128,694,200
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 403646 as yet unmatched pairs. 1200 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:830,158
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 402519 as yet unmatched pairs. 59465 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:2,888,213
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 401015 as yet unmatched pairs. 57931 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:6,587,388
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 399236 as yet unmatched pairs. 56137 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr12:6,944,387
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 398756 as yet unmatched pairs. 55644 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:12,718,184
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 396621 as yet unmatched pairs. 53492 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:31,984,084
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 395063 as yet unmatched pairs. 51901 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:47,791,616
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 394347 as yet unmatched pairs. 51156 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr12:48,845,574
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 393563 as yet unmatched pairs. 50364 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:49,053,514
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 390749 as yet unmatched pairs. 47536 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:49,559,456
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 389806 as yet unmatched pairs. 46578 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:50,992,278
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 388384 as yet unmatched pairs. 45143 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:51,505,832
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 387593 as yet unmatched pairs. 44318 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:52,902,067
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 389508 as yet unmatched pairs. 46212 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,243
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 393859 as yet unmatched pairs. 50549 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:53,291,794
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 381878 as yet unmatched pairs. 38550 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,482,853
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 380548 as yet unmatched pairs. 37209 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:54,345,487
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 381620 as yet unmatched pairs. 38254 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:56,086,612
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 379873 as yet unmatched pairs. 36496 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:56,171,842
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 376747 as yet unmatched pairs. 33361 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:56,612,117
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 376119 as yet unmatched pairs. 32708 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:57,091,980
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 374917 as yet unmatched pairs. 31497 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:57,255,047
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 372489 as yet unmatched pairs. 29053 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,716,129
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 371449 as yet unmatched pairs. 27999 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:65,170,865
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 368766 as yet unmatched pairs. 25301 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,757
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 368232 as yet unmatched pairs. 24757 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:79,596,614
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 366148 as yet unmatched pairs. 22645 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:95,861,225
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 366673 as yet unmatched pairs. 23153 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:103,930,445
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 364004 as yet unmatched pairs. 20472 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:108,523,480
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 362420 as yet unmatched pairs. 18880 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:110,344,888
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 362385 as yet unmatched pairs. 18805 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr12:112,183,133
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 359586 as yet unmatched pairs. 15987 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:113,004,952
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 357539 as yet unmatched pairs. 13917 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:116,008,799
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 356513 as yet unmatched pairs. 12877 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:120,145,061
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 354699 as yet unmatched pairs. 11030 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:120,737,941
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 352786 as yet unmatched pairs. 9095 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:122,216,533
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 351623 as yet unmatched pairs. 7914 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:123,395,134
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 349953 as yet unmatched pairs. 6228 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:124,347,858
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 348909 as yet unmatched pairs. 5172 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:131,851,112
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 348484 as yet unmatched pairs. 4718 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:132,774,188
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 345368 as yet unmatched pairs. 1579 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:20,061,084
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 344726 as yet unmatched pairs. 12413 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr13:28,272,049
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 342239 as yet unmatched pairs. 9916 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:39,017,544
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 341028 as yet unmatched pairs. 8685 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:48,256,293
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 340766 as yet unmatched pairs. 8401 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr13:72,745,133
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 337976 as yet unmatched pairs. 5586 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:98,809,420
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 336714 as yet unmatched pairs. 4296 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:110,198,581
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 335201 as yet unmatched pairs. 2762 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:113,320,443
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 334412 as yet unmatched pairs. 1951 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:21,233,978
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 335072 as yet unmatched pairs. 32594 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:23,061,314
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 330341 as yet unmatched pairs. 27851 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr14:24,121,457
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 329099 as yet unmatched pairs. 26596 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:24,368,265
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 327400 as yet unmatched pairs. 24886 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:31,294,082
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 325620 as yet unmatched pairs. 23095 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:39,181,466
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 324412 as yet unmatched pairs. 21874 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:49,894,169
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 327552 as yet unmatched pairs. 24889 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:56,605,528
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 321504 as yet unmatched pairs. 18817 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:64,220,494
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 320378 as yet unmatched pairs. 17667 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:68,880,920
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 319152 as yet unmatched pairs. 16422 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:73,498,119
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 317033 as yet unmatched pairs. 14290 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:74,778,461
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 315808 as yet unmatched pairs. 13054 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:77,459,652
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 314544 as yet unmatched pairs. 11776 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:92,143,133
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 312850 as yet unmatched pairs. 10059 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr14:95,107,986
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 311508 as yet unmatched pairs. 8714 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr14:101,901,755
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 310069 as yet unmatched pairs. 7260 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:102,939,892
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 308809 as yet unmatched pairs. 5982 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,960
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 309375 as yet unmatched pairs. 6527 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,855
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 307603 as yet unmatched pairs. 4754 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,498,778
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 303374 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:28,260,939
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 302171 as yet unmatched pairs. 26290 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:34,856,868
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 301366 as yet unmatched pairs. 25471 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,523
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 302649 as yet unmatched pairs. 26740 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:40,873,998
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 298040 as yet unmatched pairs. 22111 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:42,421,930
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 296322 as yet unmatched pairs. 20372 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:43,756,754
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 298360 as yet unmatched pairs. 22393 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:44,651,518
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 293699 as yet unmatched pairs. 17721 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr15:52,251,317
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 292577 as yet unmatched pairs. 16581 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr15:59,677,218
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 290933 as yet unmatched pairs. 14923 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr15:63,677,776
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 289300 as yet unmatched pairs. 13260 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:65,877,909
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 291403 as yet unmatched pairs. 15359 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:71,215,342
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 295062 as yet unmatched pairs. 18987 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:72,752,557
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 285326 as yet unmatched pairs. 9200 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:75,356,331
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 283459 as yet unmatched pairs. 7322 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:78,484,851
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 281649 as yet unmatched pairs. 5494 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:84,670,022
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 282263 as yet unmatched pairs. 6101 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:90,225,121
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 278648 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:98,707,912
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 277553 as yet unmatched pairs. 1349 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:397,237
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 276327 as yet unmatched pairs. 45915 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:715,838
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 274642 as yet unmatched pairs. 44223 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:1,494,287
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 271657 as yet unmatched pairs. 41230 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,037,909
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 270983 as yet unmatched pairs. 40543 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,277,935
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 269151 as yet unmatched pairs. 38699 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr16:2,762,419
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 266599 as yet unmatched pairs. 36137 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr16:2,967,064
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 264676 as yet unmatched pairs. 34197 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:3,850,916
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 263192 as yet unmatched pairs. 32708 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr16:5,078,844
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 261260 as yet unmatched pairs. 30770 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:14,186,891
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 260901 as yet unmatched pairs. 30398 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:14,930,880
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 258766 as yet unmatched pairs. 28257 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:16,169,646
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 257293 as yet unmatched pairs. 26780 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:16,372,059
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 257237 as yet unmatched pairs. 26722 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:18,391,169
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 256069 as yet unmatched pairs. 25552 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:20,813,188
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 254581 as yet unmatched pairs. 24054 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,450
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 254658 as yet unmatched pairs. 24125 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,884
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 253817 as yet unmatched pairs. 23277 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:27,464,559
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 252872 as yet unmatched pairs. 22324 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:28,831,042
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 251912 as yet unmatched pairs. 21356 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:29,484,906
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 250622 as yet unmatched pairs. 20053 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:29,986,767
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 248556 as yet unmatched pairs. 17981 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:30,239,040
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 247196 as yet unmatched pairs. 16609 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,794
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 246183 as yet unmatched pairs. 15587 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:31,139,223
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 243797 as yet unmatched pairs. 13184 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:31,329,255
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 242457 as yet unmatched pairs. 11842 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:54,933,596
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 241736 as yet unmatched pairs. 11108 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:66,727,758
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 239969 as yet unmatched pairs. 9328 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr16:68,737,405
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 240789 as yet unmatched pairs. 10129 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:70,568,289
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 236400 as yet unmatched pairs. 5726 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:80,633,030
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 234668 as yet unmatched pairs. 3966 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:88,432,087
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 232875 as yet unmatched pairs. 2145 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:89,883,442
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 231174 as yet unmatched pairs. 433 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,990
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 236060 as yet unmatched pairs. 78308 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:1,730,839
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 228171 as yet unmatched pairs. 70416 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 59s. Last read position: chr17:3,813,087
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 226387 as yet unmatched pairs. 68623 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 71s. Last read position: chr17:4,940,974
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 225429 as yet unmatched pairs. 67652 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,196,997
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 223425 as yet unmatched pairs. 65642 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,439,756
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 221589 as yet unmatched pairs. 63799 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,577,847
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 221963 as yet unmatched pairs. 64168 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:8,045,309
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 219462 as yet unmatched pairs. 61654 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:15,613,802
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 216960 as yet unmatched pairs. 59144 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:17,792,974
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 215798 as yet unmatched pairs. 57969 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:17,882,761
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 213854 as yet unmatched pairs. 56012 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:19,810,429
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 211926 as yet unmatched pairs. 54080 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,839
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 211302 as yet unmatched pairs. 53448 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:29,566,386
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 209241 as yet unmatched pairs. 51376 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr17:32,208,106
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 208324 as yet unmatched pairs. 50447 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:36,320,054
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 206125 as yet unmatched pairs. 48236 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:38,725,633
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 205083 as yet unmatched pairs. 47184 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,354
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 206711 as yet unmatched pairs. 48801 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,566
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 206038 as yet unmatched pairs. 48122 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:40,348,320
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 202635 as yet unmatched pairs. 44715 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,842
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 203314 as yet unmatched pairs. 45389 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:41,878,147
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 197494 as yet unmatched pairs. 39554 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:42,613,015
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 195388 as yet unmatched pairs. 37446 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:44,075,425
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 194529 as yet unmatched pairs. 36583 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:45,149,832
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 191849 as yet unmatched pairs. 33898 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:47,669,678
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 191583 as yet unmatched pairs. 33627 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,143,624
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 189228 as yet unmatched pairs. 31262 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,796
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 193239 as yet unmatched pairs. 35268 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,354,443
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 185568 as yet unmatched pairs. 27590 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr17:56,895,364
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 184236 as yet unmatched pairs. 26249 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:59,655,912
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 185604 as yet unmatched pairs. 27610 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:60,078,705
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 181257 as yet unmatched pairs. 23253 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:63,831,779
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 179608 as yet unmatched pairs. 21603 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:67,959,620
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 178578 as yet unmatched pairs. 20559 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:73,286,396
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 178427 as yet unmatched pairs. 20404 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:75,093,689
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 175340 as yet unmatched pairs. 17306 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,589
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 175353 as yet unmatched pairs. 17313 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:76,473,290
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 171523 as yet unmatched pairs. 13482 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:78,125,813
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 171560 as yet unmatched pairs. 13514 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:78,997,431
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 170066 as yet unmatched pairs. 12013 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:80,358,309
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 166837 as yet unmatched pairs. 8770 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:81,690,674
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 165229 as yet unmatched pairs. 7157 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:82,036,912
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 164733 as yet unmatched pairs. 6657 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:82,085,850
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 165252 as yet unmatched pairs. 7162 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:82,249,460
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 159386 as yet unmatched pairs. 1285 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr18:8,088,782
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 157273 as yet unmatched pairs. 9135 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr18:21,573,990
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 155887 as yet unmatched pairs. 7739 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr18:31,830,692
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 154463 as yet unmatched pairs. 6300 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:36,156,465
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 153975 as yet unmatched pairs. 5792 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr18:49,912,061
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 152142 as yet unmatched pairs. 3951 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:62,192,162
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 150387 as yet unmatched pairs. 2181 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr18:79,486,548
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 148800 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr19:972,048
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 146740 as yet unmatched pairs. 60899 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:1,556,243
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 144973 as yet unmatched pairs. 59127 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:3,014,605
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 143281 as yet unmatched pairs. 57434 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:4,504,526
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 141233 as yet unmatched pairs. 55382 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:5,719,749
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 139068 as yet unmatched pairs. 53213 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:7,642,238
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 137608 as yet unmatched pairs. 51745 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:10,162,681
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 135843 as yet unmatched pairs. 49976 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:11,248,127
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 134030 as yet unmatched pairs. 48161 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,372
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 132706 as yet unmatched pairs. 46834 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr19:14,441,057
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 131155 as yet unmatched pairs. 45274 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:15,269,028
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 129358 as yet unmatched pairs. 43472 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:17,301,439
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 126919 as yet unmatched pairs. 41025 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:18,760,076
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 125126 as yet unmatched pairs. 39231 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:30,014,985
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 123557 as yet unmatched pairs. 37658 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,473
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 122056 as yet unmatched pairs. 36154 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:36,100,667
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 119709 as yet unmatched pairs. 33800 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:38,309,231
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 118434 as yet unmatched pairs. 32512 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:39,176,707
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 117154 as yet unmatched pairs. 31231 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,299
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 119573 as yet unmatched pairs. 33648 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:40,807,136
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 113410 as yet unmatched pairs. 27483 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:42,249,599
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 111782 as yet unmatched pairs. 25852 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:43,502,144
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 109550 as yet unmatched pairs. 23608 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:44,908,677
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 109219 as yet unmatched pairs. 23277 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr19:45,688,386
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 106225 as yet unmatched pairs. 20281 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:46,787,947
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 104398 as yet unmatched pairs. 18453 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:48,384,399
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 103649 as yet unmatched pairs. 17698 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,140,050
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 100326 as yet unmatched pairs. 14375 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,651,570
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 98953 as yet unmatched pairs. 12992 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:50,217,649
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 96685 as yet unmatched pairs. 10723 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:53,116,152
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 95042 as yet unmatched pairs. 9072 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:54,462,526
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 93397 as yet unmatched pairs. 7421 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,579,029
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 91734 as yet unmatched pairs. 5751 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:56,821,673
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 96772 as yet unmatched pairs. 10784 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:57,809,073
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 91614 as yet unmatched pairs. 5617 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:58,037,868
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 87606 as yet unmatched pairs. 1598 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr20:420,926
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 86501 as yet unmatched pairs. 26241 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:3,223,546
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 83842 as yet unmatched pairs. 23581 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr20:16,732,211
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 82539 as yet unmatched pairs. 22272 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:22,708,742
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 80751 as yet unmatched pairs. 20480 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:32,435,058
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 79621 as yet unmatched pairs. 19346 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:34,757,466
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 77896 as yet unmatched pairs. 17612 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:36,190,341
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 76754 as yet unmatched pairs. 16469 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:38,245,937
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 74303 as yet unmatched pairs. 14016 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr20:44,489,353
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 72791 as yet unmatched pairs. 12501 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr20:46,070,293
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 71251 as yet unmatched pairs. 10958 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:49,094,855
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 70743 as yet unmatched pairs. 10449 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:53,575,968
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 68620 as yet unmatched pairs. 8317 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,346
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 69895 as yet unmatched pairs. 9590 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:62,324,947
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 65302 as yet unmatched pairs. 4995 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:63,286,437
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 63262 as yet unmatched pairs. 2955 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:63,945,844
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 61072 as yet unmatched pairs. 759 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,742
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 59669 as yet unmatched pairs. 13265 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,370
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 58834 as yet unmatched pairs. 12422 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:25,955,739
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 59273 as yet unmatched pairs. 12854 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:33,517,045
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 56221 as yet unmatched pairs. 9799 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:36,237,288
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 54601 as yet unmatched pairs. 8177 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr21:41,439,722
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 54466 as yet unmatched pairs. 8042 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr21:42,313,532
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 84295 as yet unmatched pairs. 37869 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr21:44,140,269
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 49534 as yet unmatched pairs. 3106 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:45,997,460
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 48335 as yet unmatched pairs. 1904 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:17,743,979
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 46433 as yet unmatched pairs. 19943 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:20,996,759
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 44966 as yet unmatched pairs. 18473 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:23,311,827
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 43619 as yet unmatched pairs. 17124 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:25,678,862
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 40873 as yet unmatched pairs. 14373 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,161
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 41044 as yet unmatched pairs. 14542 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:31,095,347
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 37878 as yet unmatched pairs. 11372 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:36,505,960
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 36205 as yet unmatched pairs. 9699 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:38,748,712
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 34716 as yet unmatched pairs. 8209 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:41,525,215
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 33278 as yet unmatched pairs. 6770 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:46,362,978
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 32123 as yet unmatched pairs. 5612 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:47,213,742
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 28940 as yet unmatched pairs. 2427 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,532,105
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 26920 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:9,895,091
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 25464 as yet unmatched pairs. 20576 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:23,785,521
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 25411 as yet unmatched pairs. 20518 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:41,198,678
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 22968 as yet unmatched pairs. 18074 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:47,214,947
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 21067 as yet unmatched pairs. 16173 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,283
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 20129 as yet unmatched pairs. 15229 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:53,431,877
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 18878 as yet unmatched pairs. 13978 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:54,809,331
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 17266 as yet unmatched pairs. 12365 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:71,240,944
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 15137 as yet unmatched pairs. 10236 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:77,664,697
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 14664 as yet unmatched pairs. 9763 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:103,586,972
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 13076 as yet unmatched pairs. 8175 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:120,469,156
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 10627 as yet unmatched pairs. 5726 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,226
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 11098 as yet unmatched pairs. 6197 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:153,794,743
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 9166 as yet unmatched pairs. 4264 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:154,432,430
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 7513 as yet unmatched pairs. 2611 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrM:8,081
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 4806 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,726
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 3411 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: KI270733.1:169,851
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 393 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 640642967 records. 0 pairs never matched.
INFO 2026-06-08 08:58:19 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:58:19 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:58:24 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:58:24 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,220
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,397
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:58:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,135
INFO 2026-06-08 08:58:59 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:58:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,248
INFO 2026-06-08 08:59:01 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 08:59:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,148
INFO 2026-06-08 08:59:01 OpticalDuplicateFinder Large duplicate set. size = 1711
INFO 2026-06-08 08:59:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,977
INFO 2026-06-08 08:59:28 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:59:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:00:35 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:00:45 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792694200; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 09:00:45 MarkDuplicates Marking 260016364 records as duplicates.
INFO 2026-06-08 09:00:45 MarkDuplicates Found 21943314 optical duplicate clusters.
INFO 2026-06-08 09:00:45 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:01:07 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:21s. Time for last 10,000,000: 21s. Last read position: chr1:35,358,925
INFO 2026-06-08 09:01:26 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:40s. Time for last 10,000,000: 19s. Last read position: chr1:114,737,976
INFO 2026-06-08 09:01:44 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:58s. Time for last 10,000,000: 17s. Last read position: chr1:154,173,094
INFO 2026-06-08 09:02:02 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 18s. Last read position: chr1:161,171,846
INFO 2026-06-08 09:02:19 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 17s. Last read position: chr1:207,757,075
INFO 2026-06-08 09:02:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:52s. Time for last 10,000,000: 18s. Last read position: chr2:19,936,252
INFO 2026-06-08 09:02:56 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 18s. Last read position: chr2:61,228,656
INFO 2026-06-08 09:03:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 18s. Last read position: chr2:113,133,152
INFO 2026-06-08 09:03:33 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 19s. Last read position: chr2:215,365,403
INFO 2026-06-08 09:03:52 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 18s. Last read position: chr2:241,255,182
INFO 2026-06-08 09:04:11 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:25s. Time for last 10,000,000: 18s. Last read position: chr3:49,013,700
INFO 2026-06-08 09:04:29 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 18s. Last read position: chr3:121,695,590
INFO 2026-06-08 09:04:48 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 18s. Last read position: chr3:195,867,935
INFO 2026-06-08 09:05:06 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 18s. Last read position: chr4:77,020,510
INFO 2026-06-08 09:05:25 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 18s. Last read position: chr5:14,479,992
INFO 2026-06-08 09:05:43 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:57s. Time for last 10,000,000: 18s. Last read position: chr5:136,177,460
INFO 2026-06-08 09:06:01 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 18s. Last read position: chr5:175,521,968
INFO 2026-06-08 09:06:19 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 18s. Last read position: chr6:30,889,334
INFO 2026-06-08 09:06:38 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 18s. Last read position: chr6:44,231,432
INFO 2026-06-08 09:06:56 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 17s. Last read position: chr6:151,944,234
INFO 2026-06-08 09:07:14 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 18s. Last read position: chr7:30,615,945
INFO 2026-06-08 09:07:32 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:46s. Time for last 10,000,000: 18s. Last read position: chr7:98,917,488
INFO 2026-06-08 09:07:51 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:05s. Time for last 10,000,000: 18s. Last read position: chr7:149,722,436
INFO 2026-06-08 09:08:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 18s. Last read position: chr8:37,899,061
INFO 2026-06-08 09:08:26 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 17s. Last read position: chr8:51,820,607
INFO 2026-06-08 09:08:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 17s. Last read position: chr8:115,604,917
INFO 2026-06-08 09:09:00 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 16s. Last read position: chr8:143,859,916
INFO 2026-06-08 09:09:16 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 16s. Last read position: chr8:143,865,388
INFO 2026-06-08 09:09:34 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 17s. Last read position: chr9:6,007,700
INFO 2026-06-08 09:09:51 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 17s. Last read position: chr9:114,504,226
INFO 2026-06-08 09:10:08 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 17s. Last read position: chr9:137,039,831
INFO 2026-06-08 09:10:25 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 16s. Last read position: chr10:69,392,236
INFO 2026-06-08 09:10:42 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 16s. Last read position: chr10:116,929,987
INFO 2026-06-08 09:10:58 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:3,824,309
INFO 2026-06-08 09:11:15 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 17s. Last read position: chr11:62,270,989
INFO 2026-06-08 09:11:32 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 16s. Last read position: chr11:69,641,413
INFO 2026-06-08 09:11:48 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 16s. Last read position: chr11:74,852,004
INFO 2026-06-08 09:12:05 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr11:119,277,801
INFO 2026-06-08 09:12:21 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 16s. Last read position: chr12:49,053,514
INFO 2026-06-08 09:12:37 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 16s. Last read position: chr12:56,171,842
INFO 2026-06-08 09:12:54 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 16s. Last read position: chr12:108,523,480
INFO 2026-06-08 09:13:11 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 16s. Last read position: chr12:131,851,112
INFO 2026-06-08 09:13:28 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 16s. Last read position: chr14:21,233,978
INFO 2026-06-08 09:13:44 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 16s. Last read position: chr14:73,498,119
INFO 2026-06-08 09:14:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 16s. Last read position: chr15:28,260,939
INFO 2026-06-08 09:14:18 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 16s. Last read position: chr15:65,877,909
INFO 2026-06-08 09:14:34 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 16s. Last read position: chr16:1,494,287
INFO 2026-06-08 09:14:51 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 16s. Last read position: chr16:16,372,059
INFO 2026-06-08 09:15:07 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 16s. Last read position: chr16:30,720,794
INFO 2026-06-08 09:15:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 16s. Last read position: chr17:1,364,990
INFO 2026-06-08 09:15:41 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:55s. Time for last 10,000,000: 16s. Last read position: chr17:17,882,761
INFO 2026-06-08 09:15:58 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:12s. Time for last 10,000,000: 16s. Last read position: chr17:41,524,842
INFO 2026-06-08 09:16:15 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 16s. Last read position: chr17:59,655,912
INFO 2026-06-08 09:16:32 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 16s. Last read position: chr17:80,358,309
INFO 2026-06-08 09:16:49 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 17s. Last read position: chr18:62,192,162
INFO 2026-06-08 09:17:05 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 16s. Last read position: chr19:12,792,372
INFO 2026-06-08 09:17:23 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 17s. Last read position: chr19:40,235,299
INFO 2026-06-08 09:17:40 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 16s. Last read position: chr19:50,217,649
INFO 2026-06-08 09:17:56 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 16s. Last read position: chr20:22,708,742
INFO 2026-06-08 09:18:13 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 16s. Last read position: chr20:62,324,947
INFO 2026-06-08 09:18:30 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:44s. Time for last 10,000,000: 16s. Last read position: chr21:44,140,269
INFO 2026-06-08 09:18:47 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:01s. Time for last 10,000,000: 16s. Last read position: chr22:41,525,215
INFO 2026-06-08 09:19:04 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:18s. Time for last 10,000,000: 17s. Last read position: chrX:54,809,331
INFO 2026-06-08 09:19:21 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:35s. Time for last 10,000,000: 16s. Last read position: KI270733.1:169,851
INFO 2026-06-08 09:19:28 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:19:28 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:19:28 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:19:28 MarkDuplicates Before output close freeMemory: 201470656; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:19:28 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:19:28 MarkDuplicates After output close freeMemory: 104170936; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:19:28 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.97 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory