File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/6bde636fb306a24f5e46963305dc44/.command.log
Size
6.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-e08fa3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5f18dfe8ab42d7a8613f3dc29fde89/aih-tih-sc-e08fa3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/6bde636fb306a24f5e46963305dc44/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/6197a154f736a16db1480b01846af6/aih-tih-sc-e08fa3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/6bde636fb306a24f5e46963305dc44/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
IGL-@-ext--SNTA1
starfusion
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
AL049555.1--LLGL2
starfusion
MET--GCC2
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
KCNMB2-AS1--ADGRL3
starfusion
BBOX1-AS1--ADGRL3
starfusion
TVP23C--CDRT4
starfusion
arriba
PDXDC1--NPIPB5
starfusion
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
STX16--NPEPL1
arriba
CRYZL2P--SEC16B
arriba
KANSL1--ARL17B
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing IGL-@-ext--SNTA1:   0%|          | 0/28 [00:00<?, ?it/s]
Processing IGL-@-ext--SNTA1:   4%|▎         | 1/28 [00:00<00:02,  9.26it/s]
Processing LINC00381--NKAIN2:   4%|▎         | 1/28 [00:00<00:02,  9.26it/s]
Processing LINC00381--NKAIN2:   7%|▋         | 2/28 [00:00<00:02,  9.49it/s]
Processing GUCY1B2--NKAIN2:   7%|▋         | 2/28 [00:00<00:02,  9.49it/s]  
Processing GUCY1B2--NKAIN2:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing TLK2P1--AC110079.1:  14%|█▍        | 4/28 [00:00<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  14%|█▍        | 4/28 [00:00<00:02,  9.60it/s]  
Processing TLK2--AC240565.1:  18%|█▊        | 5/28 [00:00<00:02,  9.62it/s]
Processing AL049555.1--LLGL2:  18%|█▊        | 5/28 [00:00<00:02,  9.62it/s]
Processing AL049555.1--LLGL2:  21%|██▏       | 6/28 [00:00<00:02,  9.63it/s]
Processing MET--GCC2:  21%|██▏       | 6/28 [00:00<00:02,  9.63it/s]        
Processing MET--GCC2:  25%|██▌       | 7/28 [00:00<00:02,  9.64it/s]
Processing UBE2Q2P1--GOLGA6L10:  25%|██▌       | 7/28 [00:00<00:02,  9.64it/s]
Processing UBE2Q2P1--GOLGA6L10:  29%|██▊       | 8/28 [00:00<00:02,  9.65it/s]
Processing KCNMB2-AS1--ADGRL3:  29%|██▊       | 8/28 [00:00<00:02,  9.65it/s] 
Processing KCNMB2-AS1--ADGRL3:  32%|███▏      | 9/28 [00:00<00:01,  9.65it/s]
Processing BBOX1-AS1--ADGRL3:  32%|███▏      | 9/28 [00:00<00:01,  9.65it/s] 
Processing BBOX1-AS1--ADGRL3:  36%|███▌      | 10/28 [00:01<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  36%|███▌      | 10/28 [00:01<00:01,  9.65it/s]    
Processing TVP23C--CDRT4:  39%|███▉      | 11/28 [00:01<00:01,  9.65it/s]
Processing PDXDC1--NPIPB5:  39%|███▉      | 11/28 [00:01<00:01,  9.65it/s]
Processing PDXDC1--NPIPB5:  43%|████▎     | 12/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHAC2:  43%|████▎     | 12/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHAC2:  46%|████▋     | 13/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHAC1:  46%|████▋     | 13/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHAC1:  50%|█████     | 14/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHA13:  50%|█████     | 14/28 [00:01<00:01,  9.66it/s]
Processing PCDHA4--PCDHA13:  54%|█████▎    | 15/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGC4:  54%|█████▎    | 15/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGC4:  57%|█████▋    | 16/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGA11:  57%|█████▋    | 16/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGA11:  61%|██████    | 17/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGC5:  61%|██████    | 17/28 [00:01<00:01,  9.66it/s] 
Processing PCDHGB2--PCDHGC5:  64%|██████▍   | 18/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGB7:  64%|██████▍   | 18/28 [00:01<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGB7:  68%|██████▊   | 19/28 [00:01<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  68%|██████▊   | 19/28 [00:01<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  71%|███████▏  | 20/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  71%|███████▏  | 20/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  75%|███████▌  | 21/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA9:  75%|███████▌  | 21/28 [00:02<00:00,  9.66it/s] 
Processing PCDHGB2--PCDHGA9:  79%|███████▊  | 22/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGB6:  79%|███████▊  | 22/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGB6:  82%|████████▏ | 23/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA12:  82%|████████▏ | 23/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGA12:  86%|████████▌ | 24/28 [00:02<00:00,  9.66it/s]
Processing PCDHGB2--PCDHGC3:  86%|████████▌ | 24/28 [00:02<00:00,  9.66it/s] 
Processing PCDHGB2--PCDHGC3:  89%|████████▉ | 25/28 [00:02<00:00,  9.66it/s]
Processing STX16--NPEPL1:  89%|████████▉ | 25/28 [00:02<00:00,  9.66it/s]   
Processing STX16--NPEPL1:  93%|█████████▎| 26/28 [00:02<00:00,  9.66it/s]
Processing CRYZL2P--SEC16B:  93%|█████████▎| 26/28 [00:02<00:00,  9.66it/s]
Processing CRYZL2P--SEC16B:  96%|█████████▋| 27/28 [00:02<00:00,  9.66it/s]
Processing KANSL1--ARL17B:  96%|█████████▋| 27/28 [00:02<00:00,  9.66it/s] 
Processing KANSL1--ARL17B: 100%|██████████| 28/28 [00:02<00:00,  9.66it/s]
Processing KANSL1--ARL17B: 100%|██████████| 28/28 [00:02<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory