Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5e9ae93ab1d1f941b4127ed31c7649/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/3eb7f6180e75ce673e9bf4c300081c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/3eb7f6180e75ce673e9bf4c300081c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/6d41597decfea5ca24800a5bdbcf70/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 325902503
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	325902503
Known Splicing Events:	322739047
Partial Novel Splicing Events:	1528951
Novel Splicing Events:	1534328
Filtered Splicing Events:	100177

Total splicing  Junctions:	602324
Known Splicing Junctions:	289818
Partial Novel Splicing Junctions:	174534
Novel Splicing Junctions:	137972

===================================================================
Create BED file ...
Create Interact file ...