File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/9bdef5eb3cdb5d20aecb96a4b777cb/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:00:17
                             Started mapping on |	Jun 08 09:07:12
                                    Finished on |	Jun 08 09:57:28
       Mapping speed, Million of reads per hour |	222.59

                          Number of input reads |	186477714
                      Average input read length |	216
                                    UNIQUE READS:
                   Uniquely mapped reads number |	176337720
                        Uniquely mapped reads % |	94.56%
                          Average mapped length |	214.99
                       Number of splices: Total |	151743346
            Number of splices: Annotated (sjdb) |	149324772
                       Number of splices: GT/AG |	149836272
                       Number of splices: GC/AG |	976156
                       Number of splices: AT/AC |	101493
               Number of splices: Non-canonical |	829425
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.53
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8267725
             % of reads mapped to multiple loci |	4.43%
        Number of reads mapped to too many loci |	392654
             % of reads mapped to too many loci |	0.21%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1223878
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	255737
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%