File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/bccc36cddcf3d6f592c67e7eab461f/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 220
  Pass (FILTER=PASS): 32 (14.5%)
  Fail (FILTER=FAIL): 188 (85.5%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 3
  All 3 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 42
  confidence_below_min(low<high): 28
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 5
  total_reads_below_min(5.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 3
  total_reads_below_min(3.0<8.0): 3

Breakdown by confidence:
  high: 32 pass, 12 fail (total: 44)
  low: 0 pass, 78 fail (total: 78)
  medium: 0 pass, 98 fail (total: 98)
Arriba filter: 220 rows -> 32 PASS; wrote aih-tih-sc-8c7069-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-8c7069-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-8c7069-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt