Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/5206bbf26046721eb870a04498a857/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/5206bbf26046721eb870a04498a857/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a085fbd289e2e08075078f1660e007/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/68a6e2a23ce8557c7d28f14943b6ab/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 268991144
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	268991144
Known Splicing Events:	265976736
Partial Novel Splicing Events:	1601095
Novel Splicing Events:	1311887
Filtered Splicing Events:	101426

Total splicing  Junctions:	582341
Known Splicing Junctions:	283332
Partial Novel Splicing Junctions:	167267
Novel Splicing Junctions:	131742

===================================================================
Create BED file ...
Create Interact file ...