Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/bcdb68745a9fbf26cfd36dca5f789b/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/929d82cd2258e3b38b32db4376e41f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/929d82cd2258e3b38b32db4376e41f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/2903aabf4d87add68f58268d6e8cda/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 338861066
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	338861066
Known Splicing Events:	334719490
Partial Novel Splicing Events:	1880686
Novel Splicing Events:	2105099
Filtered Splicing Events:	155791

Total splicing  Junctions:	645194
Known Splicing Junctions:	297469
Partial Novel Splicing Junctions:	203166
Novel Splicing Junctions:	144559

===================================================================
Create BED file ...
Create Interact file ...