Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/d4fc1a4f0a6f11257a8ad4e49669e9/aih-tih-sc-377071-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/5995f428ee4f716b3fa933eed5e079/aih-tih-sc-377071-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/497810be446bf0675e4fd585f925ba/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/497810be446bf0675e4fd585f925ba/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
STAT3--ACLY
starfusion
arriba
LAMA3--RMC1
starfusion
arriba
STK3--DPH6
starfusion
arriba
TLK2P1--AC110079.1
starfusion
SNTA1--EIF2S2
starfusion
arriba
MSI2--AC004448.2
starfusion
arriba
TLK2--AC240565.1
starfusion
EGF--LINC01722
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
DPH6--STK3
starfusion
AC005993.1--RGS6
starfusion
arriba
GUCY1B2--NKAIN2
starfusion
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGC3
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGB3--PCDHGA8
arriba
PCDHGB3--PCDHGB6
arriba
PCDHGB3--PCDHGC5
arriba
PCDHGB3--PCDHGC4
arriba
PCDHGB3--PCDHGC3
arriba
PCDHGB3--PCDHGA11
arriba
PCDHGB3--PCDHGA9
arriba
PCDHGB3--PCDHGB7
arriba
PCDHGB3--PCDHGA12
arriba
PCDHGB3--PCDHGA10
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGC4
arriba
PCDHA10--PCDHA13
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGA10
arriba
AC092807.3--DDAH1
arriba
AC015911.9--SLFN12L
arriba
EGF--LINC01723
arriba
DNAJA3--PRSS27
arriba
FGGY--LINC01725
arriba
TUBB4BP8--DUSP10
arriba
PAICSP7--DUSP10
arriba
PSMD11--ACLY
arriba
STON1--GTF2A1L
arriba
EFL1--GOLGA6L11P
arriba
MKNK1--DMBX1
arriba
EGF--SPTLC3
arriba
0%| | 0/78 [00:00<?, ?it/s]
Processing STAT3--ACLY: 0%| | 0/78 [00:00<?, ?it/s]
Processing STAT3--ACLY: 1%|▏ | 1/78 [00:00<00:08, 9.20it/s]
Processing LAMA3--RMC1: 1%|▏ | 1/78 [00:00<00:08, 9.20it/s]
Processing LAMA3--RMC1: 3%|▎ | 2/78 [00:00<00:08, 9.45it/s]
Processing STK3--DPH6: 3%|▎ | 2/78 [00:00<00:08, 9.45it/s]
Processing STK3--DPH6: 4%|▍ | 3/78 [00:00<00:07, 9.53it/s]
Processing TLK2P1--AC110079.1: 4%|▍ | 3/78 [00:00<00:07, 9.53it/s]
Processing TLK2P1--AC110079.1: 5%|▌ | 4/78 [00:00<00:07, 9.57it/s]
Processing SNTA1--EIF2S2: 5%|▌ | 4/78 [00:00<00:07, 9.57it/s]
Processing SNTA1--EIF2S2: 6%|▋ | 5/78 [00:00<00:07, 9.58it/s]
Processing MSI2--AC004448.2: 6%|▋ | 5/78 [00:00<00:07, 9.58it/s]
Processing MSI2--AC004448.2: 8%|▊ | 6/78 [00:00<00:07, 9.60it/s]
Processing TLK2--AC240565.1: 8%|▊ | 6/78 [00:00<00:07, 9.60it/s]
Processing TLK2--AC240565.1: 9%|▉ | 7/78 [00:00<00:07, 9.61it/s]
Processing EGF--LINC01722: 9%|▉ | 7/78 [00:00<00:07, 9.61it/s]
Processing EGF--LINC01722: 10%|█ | 8/78 [00:00<00:07, 9.62it/s]
Processing STX16--NPEPL1: 10%|█ | 8/78 [00:00<00:07, 9.62it/s]
Processing STX16--NPEPL1: 12%|█▏ | 9/78 [00:00<00:07, 9.62it/s]
Processing DPH6--STK3: 12%|█▏ | 9/78 [00:00<00:07, 9.62it/s]
Processing DPH6--STK3: 13%|█▎ | 10/78 [00:01<00:07, 9.63it/s]
Processing AC005993.1--RGS6: 13%|█▎ | 10/78 [00:01<00:07, 9.63it/s]
Processing AC005993.1--RGS6: 14%|█▍ | 11/78 [00:01<00:06, 9.63it/s]
Processing GUCY1B2--NKAIN2: 14%|█▍ | 11/78 [00:01<00:06, 9.63it/s]
Processing GUCY1B2--NKAIN2: 15%|█▌ | 12/78 [00:01<00:06, 9.62it/s]
Processing TVP23C--CDRT4: 15%|█▌ | 12/78 [00:01<00:06, 9.62it/s]
Processing TVP23C--CDRT4: 17%|█▋ | 13/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 17%|█▋ | 13/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 18%|█▊ | 14/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 18%|█▊ | 14/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 19%|█▉ | 15/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 19%|█▉ | 15/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 21%|██ | 16/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 21%|██ | 16/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 22%|██▏ | 17/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 22%|██▏ | 17/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 23%|██▎ | 18/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 23%|██▎ | 18/78 [00:01<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 24%|██▍ | 19/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGA9: 24%|██▍ | 19/78 [00:01<00:06, 9.62it/s]
Processing PCDHGB2--PCDHGA9: 26%|██▌ | 20/78 [00:02<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 26%|██▌ | 20/78 [00:02<00:06, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 27%|██▋ | 21/78 [00:02<00:05, 9.62it/s]
Processing PCDHGB2--PCDHGA12: 27%|██▋ | 21/78 [00:02<00:05, 9.62it/s]
Processing PCDHGB2--PCDHGA12: 28%|██▊ | 22/78 [00:02<00:05, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 28%|██▊ | 22/78 [00:02<00:05, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 29%|██▉ | 23/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGA8: 29%|██▉ | 23/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGA8: 31%|███ | 24/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGB6: 31%|███ | 24/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGB6: 32%|███▏ | 25/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC5: 32%|███▏ | 25/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC5: 33%|███▎ | 26/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA5--PCDHGA8: 33%|███▎ | 26/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA5--PCDHGA8: 35%|███▍ | 27/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC4: 35%|███▍ | 27/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC4: 36%|███▌ | 28/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC3: 36%|███▌ | 28/78 [00:02<00:05, 9.63it/s]
Processing PCDHGA2--PCDHGC3: 37%|███▋ | 29/78 [00:03<00:05, 9.63it/s]
Processing PCDHGA5--PCDHGB6: 37%|███▋ | 29/78 [00:03<00:05, 9.63it/s]
Processing PCDHGA5--PCDHGB6: 38%|███▊ | 30/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC5: 38%|███▊ | 30/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC5: 40%|███▉ | 31/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA11: 40%|███▉ | 31/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA11: 41%|████ | 32/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC4: 41%|████ | 32/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC4: 42%|████▏ | 33/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA9: 42%|████▏ | 33/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA9: 44%|████▎ | 34/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGB7: 44%|████▎ | 34/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGB7: 45%|████▍ | 35/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC3: 45%|████▍ | 35/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGC3: 46%|████▌ | 36/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGA11: 46%|████▌ | 36/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGA11: 47%|████▋ | 37/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA12: 47%|████▋ | 37/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA12: 49%|████▊ | 38/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA10: 49%|████▊ | 38/78 [00:03<00:04, 9.63it/s]
Processing PCDHGA2--PCDHGA10: 50%|█████ | 39/78 [00:04<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGA9: 50%|█████ | 39/78 [00:04<00:04, 9.63it/s]
Processing PCDHGA5--PCDHGA9: 51%|█████▏ | 40/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGB7: 51%|█████▏ | 40/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGB7: 53%|█████▎ | 41/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGA12: 53%|█████▎ | 41/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGA12: 54%|█████▍ | 42/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGA10: 54%|█████▍ | 42/78 [00:04<00:03, 9.63it/s]
Processing PCDHGA5--PCDHGA10: 55%|█████▌ | 43/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA8: 55%|█████▌ | 43/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA8: 56%|█████▋ | 44/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGB6: 56%|█████▋ | 44/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGB6: 58%|█████▊ | 45/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC5: 58%|█████▊ | 45/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC5: 59%|█████▉ | 46/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC4: 59%|█████▉ | 46/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC4: 60%|██████ | 47/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC3: 60%|██████ | 47/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGC3: 62%|██████▏ | 48/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA11: 62%|██████▏ | 48/78 [00:04<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA11: 63%|██████▎ | 49/78 [00:05<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA9: 63%|██████▎ | 49/78 [00:05<00:03, 9.63it/s]
Processing PCDHGB3--PCDHGA9: 64%|██████▍ | 50/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGB7: 64%|██████▍ | 50/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGB7: 65%|██████▌ | 51/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGA12: 65%|██████▌ | 51/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGA12: 67%|██████▋ | 52/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGA10: 67%|██████▋ | 52/78 [00:05<00:02, 9.63it/s]
Processing PCDHGB3--PCDHGA10: 68%|██████▊ | 53/78 [00:05<00:02, 9.63it/s]
Processing PCDHA10--PCDHAC2: 68%|██████▊ | 53/78 [00:05<00:02, 9.63it/s]
Processing PCDHA10--PCDHAC2: 69%|██████▉ | 54/78 [00:05<00:02, 9.63it/s]
Processing PCDHA10--PCDHAC1: 69%|██████▉ | 54/78 [00:05<00:02, 9.63it/s]
Processing PCDHA10--PCDHAC1: 71%|███████ | 55/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGA8: 71%|███████ | 55/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGA8: 72%|███████▏ | 56/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGB6: 72%|███████▏ | 56/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGB6: 73%|███████▎ | 57/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGC5: 73%|███████▎ | 57/78 [00:05<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGC5: 74%|███████▍ | 58/78 [00:06<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGC4: 74%|███████▍ | 58/78 [00:06<00:02, 9.63it/s]
Processing PCDHGA6--PCDHGC4: 76%|███████▌ | 59/78 [00:06<00:01, 9.63it/s]
Processing PCDHA10--PCDHA13: 76%|███████▌ | 59/78 [00:06<00:01, 9.63it/s]
Processing PCDHA10--PCDHA13: 77%|███████▋ | 60/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGC3: 77%|███████▋ | 60/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGC3: 78%|███████▊ | 61/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA11: 78%|███████▊ | 61/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA11: 79%|███████▉ | 62/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA9: 79%|███████▉ | 62/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA9: 81%|████████ | 63/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGB7: 81%|████████ | 63/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGB7: 82%|████████▏ | 64/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA12: 82%|████████▏ | 64/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA12: 83%|████████▎ | 65/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA10: 83%|████████▎ | 65/78 [00:06<00:01, 9.63it/s]
Processing PCDHGA6--PCDHGA10: 85%|████████▍ | 66/78 [00:06<00:01, 9.63it/s]
Processing AC092807.3--DDAH1: 85%|████████▍ | 66/78 [00:06<00:01, 9.63it/s]
Processing AC092807.3--DDAH1: 86%|████████▌ | 67/78 [00:06<00:01, 9.63it/s]
Processing AC015911.9--SLFN12L: 86%|████████▌ | 67/78 [00:06<00:01, 9.63it/s]
Processing AC015911.9--SLFN12L: 87%|████████▋ | 68/78 [00:07<00:01, 9.63it/s]
Processing EGF--LINC01723: 87%|████████▋ | 68/78 [00:07<00:01, 9.63it/s]
Processing EGF--LINC01723: 88%|████████▊ | 69/78 [00:07<00:00, 9.62it/s]
Processing DNAJA3--PRSS27: 88%|████████▊ | 69/78 [00:07<00:00, 9.62it/s]
Processing DNAJA3--PRSS27: 90%|████████▉ | 70/78 [00:07<00:00, 9.63it/s]
Processing FGGY--LINC01725: 90%|████████▉ | 70/78 [00:07<00:00, 9.63it/s]
Processing FGGY--LINC01725: 91%|█████████ | 71/78 [00:07<00:00, 9.62it/s]
Processing TUBB4BP8--DUSP10: 91%|█████████ | 71/78 [00:07<00:00, 9.62it/s]
Processing TUBB4BP8--DUSP10: 92%|█████████▏| 72/78 [00:07<00:00, 9.63it/s]
Processing PAICSP7--DUSP10: 92%|█████████▏| 72/78 [00:07<00:00, 9.63it/s]
Processing PAICSP7--DUSP10: 94%|█████████▎| 73/78 [00:07<00:00, 9.62it/s]
Processing PSMD11--ACLY: 94%|█████████▎| 73/78 [00:07<00:00, 9.62it/s]
Processing PSMD11--ACLY: 95%|█████████▍| 74/78 [00:07<00:00, 9.63it/s]
Processing STON1--GTF2A1L: 95%|█████████▍| 74/78 [00:07<00:00, 9.63it/s]
Processing STON1--GTF2A1L: 96%|█████████▌| 75/78 [00:07<00:00, 9.62it/s]
Processing EFL1--GOLGA6L11P: 96%|█████████▌| 75/78 [00:07<00:00, 9.62it/s]
Processing EFL1--GOLGA6L11P: 97%|█████████▋| 76/78 [00:07<00:00, 9.62it/s]
Processing MKNK1--DMBX1: 97%|█████████▋| 76/78 [00:07<00:00, 9.62it/s]
Processing MKNK1--DMBX1: 99%|█████████▊| 77/78 [00:08<00:00, 9.62it/s]
Processing EGF--SPTLC3: 99%|█████████▊| 77/78 [00:08<00:00, 9.62it/s]
Processing EGF--SPTLC3: 100%|██████████| 78/78 [00:08<00:00, 9.62it/s]
Processing EGF--SPTLC3: 100%|██████████| 78/78 [00:08<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory