-ctat genome lib [/tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.RZQ5uNvkCA/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary
-sample contains 216439276 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir  -J /tmp/nxf.RZQ5uNvkCA/aih-tih-sc-a97ce1-R1_A23YTGFLT4_1.Chimeric.out.junction  -O /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.RZQ5uNvkCA/aih-tih-sc-a97ce1-R1_A23YTGFLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2400000], rate=93445.81/min -building interval tree based on /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2380000], rate=72894.33/min -building interval tree based on /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=50000.00/min 
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[2360000], rate=59772.06/min 
[2370000], rate=59747.90/min -building interval tree based on /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=150000.00/min 
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[2370000], rate=59647.65/min 
[2380000], rate=59475.22/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 15000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 14000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 10800000.00 reads per min processed...  
 8571428.57 reads per min processed...  
 7333333.33 reads per min processed...  
 6545454.55 reads per min processed...  
 6500000.00 reads per min processed...  
 6000000.00 reads per min processed...  
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 5647058.82 reads per min processed...  
 5368421.05 reads per min processed...  
 5142857.14 reads per min processed...  
 5181818.18 reads per min processed...  
 5000000.00 reads per min processed...  
 4846153.85 reads per min processed...  
 4888888.89 reads per min processed...  
 4758620.69 reads per min processed...  
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 4140845.07 reads per min processed...  
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 4357142.86 reads per min processed...  
 4325581.40 reads per min processed...  
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 4333333.33 reads per min processed...  
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 4322580.65 reads per min processed...  
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 4222222.22 reads per min processed...  
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 4216216.22 reads per min processed...  
 4232142.86 reads per min processed...  
 4247787.61 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.RZQ5uNvkCA/aih-tih-sc-a97ce1-R1_A23YTGFLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -334973.113550
EM: Round [1] log likelihood: -334686.253510
EM: Round [2] log likelihood: -334580.163018
EM: Round [3] log likelihood: -334530.535975
EM: Round [4] log likelihood: -334504.610724
EM: Round [5] log likelihood: -334490.200285
EM: Round [6] log likelihood: -334481.812428
EM: Round [7] log likelihood: -334476.717559
EM: Round [8] log likelihood: -334473.491329
EM: Round [9] log likelihood: -334471.365469
EM: Round [10] log likelihood: -334469.912291
EM: Round [11] log likelihood: -334468.885665
EM: Round [12] log likelihood: -334468.138996
EM: Round [13] log likelihood: -334467.581950
EM: Round [14] log likelihood: -334467.157013
EM: Round [15] log likelihood: -334466.826448
EM: Round [16] log likelihood: -334466.564804
EM: Round [17] log likelihood: -334466.354490
EM: Round [18] log likelihood: -334466.183081
EM: Round [19] log likelihood: -334466.041630
EM: Round [20] log likelihood: -334465.923583
EM: Round [21] log likelihood: -334465.824063
EM: Round [22] log likelihood: -334465.739390
EM: Round [23] log likelihood: -334465.666748
EM: Round [24] log likelihood: -334465.603960
EM: Round [25] log likelihood: -334465.549320
EM: Round [26] log likelihood: -334465.501479
EM: Round [27] log likelihood: -334465.459358
EM: Round [28] log likelihood: -334465.422086
EM: Round [29] log likelihood: -334465.388955
EM: Round [30] log likelihood: -334465.359381
EM: Round [31] log likelihood: -334465.332883
EM: Round [32] log likelihood: -334465.309058
EM: Round [33] log likelihood: -334465.287568
EM: Round [34] log likelihood: -334465.268128
EM: Round [35] log likelihood: -334465.250494
EM: Round [36] log likelihood: -334465.234457
EM: Round [37] log likelihood: -334465.219839
EM: Round [38] log likelihood: -334465.206486
EM: Round [39] log likelihood: -334465.194262
EM: Round [40] log likelihood: -334465.183050
EM: Round [41] log likelihood: -334465.172747
EM: Round [42] log likelihood: -334465.163264
EM: Round [43] log likelihood: -334465.154521
EM: Round [44] log likelihood: -334465.146447
EM: Round [45] log likelihood: -334465.138980
EM: Round [46] log likelihood: -334465.132064
EM: Round [47] log likelihood: -334465.125649
EM: Round [48] log likelihood: -334465.119693
EM: Round [49] log likelihood: -334465.114153
EM: Round [50] log likelihood: -334465.108996
EM: Round [51] log likelihood: -334465.104188
EM: Round [52] log likelihood: -334465.099701
EM: Round [53] log likelihood: -334465.095509
EM: Round [54] log likelihood: -334465.091588
EM: Round [55] log likelihood: -334465.087917
EM: Round [56] log likelihood: -334465.084476
EM: Round [57] log likelihood: -334465.081247
EM: Round [58] log likelihood: -334465.078214
EM: Round [59] log likelihood: -334465.075363
EM: Round [60] log likelihood: -334465.072681
EM: Round [61] log likelihood: -334465.070154
EM: Round [62] log likelihood: -334465.067772
EM: Round [63] log likelihood: -334465.065525
EM: Round [64] log likelihood: -334465.063402
EM: Round [65] log likelihood: -334465.061396
EM: Round [66] log likelihood: -334465.059499
EM: Round [67] log likelihood: -334465.057703
EM: Round [68] log likelihood: -334465.056002
EM: Round [69] log likelihood: -334465.054389
EM: Round [70] log likelihood: -334465.052858
EM: Round [71] log likelihood: -334465.051405
EM: Round [72] log likelihood: -334465.050025
EM: Round [73] log likelihood: -334465.048712
EM: Round [74] log likelihood: -334465.047463
EM: Round [75] log likelihood: -334465.046275
EM: Round [76] log likelihood: -334465.045142
EM: Round [77] log likelihood: -334465.044063
EM: Round [78] log likelihood: -334465.043034
EM: Round [79] log likelihood: -334465.042051
EM: Round [80] log likelihood: -334465.041113
EM: Round [81] log likelihood: -334465.040218
EM: Round [82] log likelihood: -334465.039361
EM: Round [83] log likelihood: -334465.038543
EM: Round [84] log likelihood: -334465.037759
EM: Round [85] log likelihood: -334465.037009
EM: Round [86] log likelihood: -334465.036291
EM: Round [87] log likelihood: -334465.035603
EM: Round [88] log likelihood: -334465.034944
EM: Round [89] log likelihood: -334465.034312
EM: Round [90] log likelihood: -334465.033705
EM: Round [91] log likelihood: -334465.033124
EM: Round [92] log likelihood: -334465.032565
EM: Round [93] log likelihood: -334465.032029
EM: Round [94] log likelihood: -334465.031513
EM: Round [95] log likelihood: -334465.031018
EM: Round [96] log likelihood: -334465.030542
EM: Round [97] log likelihood: -334465.030084
EM: Round [98] log likelihood: -334465.029644
EM: Round [99] log likelihood: -334465.029221
EM: Round [100] log likelihood: -334465.028813
EM: Round [101] log likelihood: -334465.028421
EM: Round [102] log likelihood: -334465.028043
EM: Round [103] log likelihood: -334465.027679
EM: Round [104] log likelihood: -334465.027328
EM: Round [105] log likelihood: -334465.026990
EM: Round [106] log likelihood: -334465.026664
EM: Round [107] log likelihood: -334465.026350
EM: Round [108] log likelihood: -334465.026047
EM: Round [109] log likelihood: -334465.025755
EM: Round [110] log likelihood: -334465.025473
EM: Round [111] log likelihood: -334465.025202
EM: Round [112] log likelihood: -334465.024939
EM: Round [113] log likelihood: -334465.024686
EM: Round [114] log likelihood: -334465.024441
EM: Round [115] log likelihood: -334465.024205
EM: Round [116] log likelihood: -334465.023977
EM: Round [117] log likelihood: -334465.023757
EM: Round [118] log likelihood: -334465.023544
EM: Round [119] log likelihood: -334465.023338
EM: Round [120] log likelihood: -334465.023139
EM: Round [121] log likelihood: -334465.022947
EM: Round [122] log likelihood: -334465.022761
EM: Round [123] log likelihood: -334465.022582
EM: Round [124] log likelihood: -334465.022408
EM: Round [125] log likelihood: -334465.022240
EM: Round [126] log likelihood: -334465.022078
EM: Round [127] log likelihood: -334465.021920
EM: Round [128] log likelihood: -334465.021768
EM: Round [129] log likelihood: -334465.021621
EM: Round [130] log likelihood: -334465.021479
EM: Round [131] log likelihood: -334465.021341
EM: Round [132] log likelihood: -334465.021208
EM: Round [133] log likelihood: -334465.021078
EM: Round [134] log likelihood: -334465.020953
EM: Round [135] log likelihood: -334465.020832
EM: Round [136] log likelihood: -334465.020715
EM: Round [137] log likelihood: -334465.020601
EM: Round [138] log likelihood: -334465.020491
EM: Round [139] log likelihood: -334465.020385
EM: Round [140] log likelihood: -334465.020282
EM: Round [141] log likelihood: -334465.020182
EM: Round [142] log likelihood: -334465.020085
EM: Stopping iterations at round 142 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -334769.128762
EM: Round [1] log likelihood: -334517.850724
EM: Round [2] log likelihood: -334428.251153
EM: Round [3] log likelihood: -334387.012233
EM: Round [4] log likelihood: -334365.657556
EM: Round [5] log likelihood: -334353.863176
EM: Round [6] log likelihood: -334347.029597
EM: Round [7] log likelihood: -334342.892733
EM: Round [8] log likelihood: -334340.281021
EM: Round [9] log likelihood: -334338.566069
EM: Round [10] log likelihood: -334337.398996
EM: Round [11] log likelihood: -334336.579145
EM: Round [12] log likelihood: -334335.986935
EM: Round [13] log likelihood: -334335.548604
EM: Round [14] log likelihood: -334335.217154
EM: Round [15] log likelihood: -334334.961734
EM: Round [16] log likelihood: -334334.761546
EM: Round [17] log likelihood: -334334.602230
EM: Round [18] log likelihood: -334334.473666
EM: Round [19] log likelihood: -334334.368587
EM: Round [20] log likelihood: -334334.281689
EM: Round [21] log likelihood: -334334.209045
EM: Round [22] log likelihood: -334334.147709
EM: Round [23] log likelihood: -334334.095441
EM: Round [24] log likelihood: -334334.050523
EM: Round [25] log likelihood: -334334.011620
EM: Round [26] log likelihood: -334333.977684
EM: Round [27] log likelihood: -334333.947887
EM: Round [28] log likelihood: -334333.921567
EM: Round [29] log likelihood: -334333.898191
EM: Round [30] log likelihood: -334333.877326
EM: Round [31] log likelihood: -334333.858615
EM: Round [32] log likelihood: -334333.841767
EM: Round [33] log likelihood: -334333.826538
EM: Round [34] log likelihood: -334333.812724
EM: Round [35] log likelihood: -334333.800154
EM: Round [36] log likelihood: -334333.788680
EM: Round [37] log likelihood: -334333.778180
EM: Round [38] log likelihood: -334333.768546
EM: Round [39] log likelihood: -334333.759688
EM: Round [40] log likelihood: -334333.751523
EM: Round [41] log likelihood: -334333.743985
EM: Round [42] log likelihood: -334333.737010
EM: Round [43] log likelihood: -334333.730547
EM: Round [44] log likelihood: -334333.724548
EM: Round [45] log likelihood: -334333.718970
EM: Round [46] log likelihood: -334333.713778
EM: Round [47] log likelihood: -334333.708937
EM: Round [48] log likelihood: -334333.704419
EM: Round [49] log likelihood: -334333.700196
EM: Round [50] log likelihood: -334333.696245
EM: Round [51] log likelihood: -334333.692543
EM: Round [52] log likelihood: -334333.689073
EM: Round [53] log likelihood: -334333.685815
EM: Round [54] log likelihood: -334333.682753
EM: Round [55] log likelihood: -334333.679874
EM: Round [56] log likelihood: -334333.677164
EM: Round [57] log likelihood: -334333.674610
EM: Round [58] log likelihood: -334333.672202
EM: Round [59] log likelihood: -334333.669929
EM: Round [60] log likelihood: -334333.667783
EM: Round [61] log likelihood: -334333.665753
EM: Round [62] log likelihood: -334333.663833
EM: Round [63] log likelihood: -334333.662016
EM: Round [64] log likelihood: -334333.660294
EM: Round [65] log likelihood: -334333.658661
EM: Round [66] log likelihood: -334333.657112
EM: Round [67] log likelihood: -334333.655642
EM: Round [68] log likelihood: -334333.654245
EM: Round [69] log likelihood: -334333.652917
EM: Round [70] log likelihood: -334333.651654
EM: Round [71] log likelihood: -334333.650451
EM: Round [72] log likelihood: -334333.649307
EM: Round [73] log likelihood: -334333.648216
EM: Round [74] log likelihood: -334333.647175
EM: Round [75] log likelihood: -334333.646183
EM: Round [76] log likelihood: -334333.645236
EM: Round [77] log likelihood: -334333.644332
EM: Round [78] log likelihood: -334333.643468
EM: Round [79] log likelihood: -334333.642642
EM: Round [80] log likelihood: -334333.641852
EM: Round [81] log likelihood: -334333.641097
EM: Round [82] log likelihood: -334333.640374
EM: Round [83] log likelihood: -334333.639681
EM: Round [84] log likelihood: -334333.639018
EM: Round [85] log likelihood: -334333.638382
EM: Round [86] log likelihood: -334333.637772
EM: Round [87] log likelihood: -334333.637187
EM: Round [88] log likelihood: -334333.636626
EM: Round [89] log likelihood: -334333.636088
EM: Round [90] log likelihood: -334333.635571
EM: Round [91] log likelihood: -334333.635074
EM: Round [92] log likelihood: -334333.634597
EM: Round [93] log likelihood: -334333.634139
EM: Round [94] log likelihood: -334333.633698
EM: Round [95] log likelihood: -334333.633274
EM: Round [96] log likelihood: -334333.632866
EM: Round [97] log likelihood: -334333.632473
EM: Round [98] log likelihood: -334333.632096
EM: Round [99] log likelihood: -334333.631732
EM: Round [100] log likelihood: -334333.631382
EM: Round [101] log likelihood: -334333.631044
EM: Round [102] log likelihood: -334333.630719
EM: Round [103] log likelihood: -334333.630406
EM: Round [104] log likelihood: -334333.630104
EM: Round [105] log likelihood: -334333.629813
EM: Round [106] log likelihood: -334333.629532
EM: Round [107] log likelihood: -334333.629262
EM: Round [108] log likelihood: -334333.629000
EM: Round [109] log likelihood: -334333.628748
EM: Round [110] log likelihood: -334333.628505
EM: Round [111] log likelihood: -334333.628270
EM: Round [112] log likelihood: -334333.628044
EM: Round [113] log likelihood: -334333.627825
EM: Round [114] log likelihood: -334333.627613
EM: Round [115] log likelihood: -334333.627409
EM: Round [116] log likelihood: -334333.627212
EM: Round [117] log likelihood: -334333.627022
EM: Round [118] log likelihood: -334333.626837
EM: Round [119] log likelihood: -334333.626659
EM: Round [120] log likelihood: -334333.626487
EM: Round [121] log likelihood: -334333.626321
EM: Round [122] log likelihood: -334333.626160
EM: Round [123] log likelihood: -334333.626005
EM: Round [124] log likelihood: -334333.625854
EM: Round [125] log likelihood: -334333.625709
EM: Round [126] log likelihood: -334333.625568
EM: Round [127] log likelihood: -334333.625432
EM: Round [128] log likelihood: -334333.625300
EM: Round [129] log likelihood: -334333.625172
EM: Round [130] log likelihood: -334333.625049
EM: Round [131] log likelihood: -334333.624929
EM: Round [132] log likelihood: -334333.624813
EM: Round [133] log likelihood: -334333.624701
EM: Round [134] log likelihood: -334333.624593
EM: Round [135] log likelihood: -334333.624488
EM: Round [136] log likelihood: -334333.624386
EM: Round [137] log likelihood: -334333.624288
EM: Stopping iterations at round 137 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 216439276 > /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir > /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir --annotate /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir
-done, see /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2251, filtered: 11466)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.RZQ5uNvkCA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.RZQ5uNvkCA/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
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WARNING, no entry stored in dbm for [ENSG00000253107.1]
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WARNING, no entry stored in dbm for [ENSG00000264739.1]
WARNING, no entry stored in dbm for [ENSG00000287698.1]
WARNING, no entry stored in dbm for [ENSG00000242779.7]
WARNING, no entry stored in dbm for [ENSG00000204789.4]
WARNING, no entry stored in dbm for [ENSG00000233593.10]
WARNING, no entry stored in dbm for [ENSG00000261126.7]
WARNING, no entry stored in dbm for [ENSG00000248538.8]
WARNING, no entry stored in dbm for [ENSG00000255259.2]
WARNING, no entry stored in dbm for [ENSG00000257267.3]
WARNING, no entry stored in dbm for [ENSG00000184617.10]
WARNING, no entry stored in dbm for [ENSG00000264278.1]
WARNING, no entry stored in dbm for [ENSG00000287688.1]
WARNING, no entry stored in dbm for [ENSG00000254170.1]
WARNING, no entry stored in dbm for [ENSG00000133519.12]
WARNING, no entry stored in dbm for [ENSG00000241560.7]
WARNING, no entry stored in dbm for [ENSG00000256628.3]
WARNING, no entry stored in dbm for [ENSG00000261659.2]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000226383.7]
WARNING, no entry stored in dbm for [ENSG00000264546.1]
WARNING, no entry stored in dbm for [ENSG00000237331.1]
WARNING, no entry stored in dbm for [ENSG00000271394.1]
WARNING, no entry stored in dbm for [ENSG00000236778.8]
WARNING, no entry stored in dbm for [ENSG00000206120.11]
WARNING, no entry stored in dbm for [ENSG00000285961.1]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000226210.3]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000234769.7]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000253948.2]
WARNING, no entry stored in dbm for [ENSG00000253679.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000275139.1]
WARNING, no entry stored in dbm for [ENSG00000228065.11]
WARNING, no entry stored in dbm for [ENSG00000268686.2]
WARNING, no entry stored in dbm for [ENSG00000253382.3]
WARNING, no entry stored in dbm for [ENSG00000227066.2]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000250979.1]
WARNING, no entry stored in dbm for [ENSG00000243023.2]
WARNING, no entry stored in dbm for [ENSG00000243498.2]
WARNING, no entry stored in dbm for [ENSG00000235706.8]
WARNING, no entry stored in dbm for [ENSG00000214770.3]
WARNING, no entry stored in dbm for [ENSG00000212856.6]
WARNING, no entry stored in dbm for [ENSG00000198054.12]
WARNING, no entry stored in dbm for [ENSG00000223756.7]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000285931.1]
WARNING, no entry stored in dbm for [ENSG00000232894.1]
WARNING, no entry stored in dbm for [ENSG00000232894.1]
WARNING, no entry stored in dbm for [ENSG00000232600.3]
WARNING, no entry stored in dbm for [ENSG00000257167.2]
WARNING, no entry stored in dbm for [ENSG00000256625.1]
WARNING, no entry stored in dbm for [ENSG00000254860.6]
WARNING, no entry stored in dbm for [ENSG00000232719.1]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000226287.8]
WARNING, no entry stored in dbm for [ENSG00000225022.1]
WARNING, no entry stored in dbm for [ENSG00000233358.2]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000224966.4]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000267515.1]
WARNING, no entry stored in dbm for [ENSG00000259632.2]
WARNING, no entry stored in dbm for [ENSG00000213234.4]
WARNING, no entry stored in dbm for [ENSG00000242267.6]
WARNING, no entry stored in dbm for [ENSG00000273628.1]
WARNING, no entry stored in dbm for [ENSG00000267083.1]
WARNING, no entry stored in dbm for [ENSG00000206120.11]
WARNING, no entry stored in dbm for [ENSG00000267322.2]
WARNING, no entry stored in dbm for [ENSG00000248121.8]
WARNING, no entry stored in dbm for [ENSG00000273609.1]
WARNING, no entry stored in dbm for [ENSG00000224555.3]
WARNING, no entry stored in dbm for [ENSG00000235824.5]
WARNING, no entry stored in dbm for [ENSG00000261556.10]
WARNING, no entry stored in dbm for [ENSG00000287447.1]
WARNING, no entry stored in dbm for [ENSG00000224893.7]
WARNING, no entry stored in dbm for [ENSG00000278733.1]
WARNING, no entry stored in dbm for [ENSG00000228335.1]
WARNING, no entry stored in dbm for [ENSG00000263072.8]
WARNING, no entry stored in dbm for [ENSG00000174407.13]
WARNING, no entry stored in dbm for [ENSG00000254799.1]
WARNING, no entry stored in dbm for [ENSG00000287236.1]
WARNING, no entry stored in dbm for [ENSG00000283453.2]
WARNING, no entry stored in dbm for [ENSG00000232104.3]
WARNING, no entry stored in dbm for [ENSG00000270195.2]
WARNING, no entry stored in dbm for [ENSG00000272701.3]
WARNING, no entry stored in dbm for [ENSG00000234337.4]
WARNING, no entry stored in dbm for [ENSG00000269904.2]
WARNING, no entry stored in dbm for [ENSG00000248932.6]
WARNING, no entry stored in dbm for [ENSG00000229415.10]
WARNING, no entry stored in dbm for [ENSG00000275665.1]
WARNING, no entry stored in dbm for [ENSG00000203706.8]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000215837.7]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000251532.1]
WARNING, no entry stored in dbm for [ENSG00000255177.2]
WARNING, no entry stored in dbm for [ENSG00000236345.1]
WARNING, no entry stored in dbm for [ENSG00000248152.2]
WARNING, no entry stored in dbm for [ENSG00000216285.5]
WARNING, no entry stored in dbm for [ENSG00000250332.1]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000233329.1]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000215869.4]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000243929.1]
WARNING, no entry stored in dbm for [ENSG00000243761.1]
WARNING, no entry stored in dbm for [ENSG00000215002.2]
WARNING, no entry stored in dbm for [ENSG00000269244.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000226217.1]
WARNING, no entry stored in dbm for [ENSG00000237169.1]
WARNING, no entry stored in dbm for [ENSG00000243824.1]
WARNING, no entry stored in dbm for [ENSG00000207205.1]
WARNING, no entry stored in dbm for [ENSG00000264916.2]
WARNING, no entry stored in dbm for [ENSG00000259277.1]
WARNING, no entry stored in dbm for [ENSG00000263818.5]
WARNING, no entry stored in dbm for [ENSG00000285858.1]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000205913.7]
WARNING, no entry stored in dbm for [ENSG00000233369.7]
WARNING, no entry stored in dbm for [ENSG00000267422.1]
WARNING, no entry stored in dbm for [ENSG00000252594.1]
WARNING, no entry stored in dbm for [ENSG00000207083.1]
WARNING, no entry stored in dbm for [ENSG00000207257.1]
WARNING, no entry stored in dbm for [ENSG00000206972.1]
WARNING, no entry stored in dbm for [ENSG00000229502.5]
WARNING, no entry stored in dbm for [ENSG00000233514.1]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000279296.1]
WARNING, no entry stored in dbm for [ENSG00000124224.17]
WARNING, no entry stored in dbm for [ENSG00000244251.1]
WARNING, no entry stored in dbm for [ENSG00000272419.6]
WARNING, no entry stored in dbm for [ENSG00000224075.2]
WARNING, no entry stored in dbm for [ENSG00000205578.6]
WARNING, no entry stored in dbm for [ENSG00000237468.2]
WARNING, no entry stored in dbm for [ENSG00000223756.7]
WARNING, no entry stored in dbm for [ENSG00000178248.11]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000225264.3]
WARNING, no entry stored in dbm for [ENSG00000256751.6]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000234835.1]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000236990.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000249188.1]
WARNING, no entry stored in dbm for [ENSG00000227418.6]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000281880.2]
WARNING, no entry stored in dbm for [ENSG00000204352.4]
WARNING, no entry stored in dbm for [ENSG00000233997.5]
WARNING, no entry stored in dbm for [ENSG00000249740.3]
WARNING, no entry stored in dbm for [ENSG00000251138.7]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000284055.1]
WARNING, no entry stored in dbm for [ENSG00000187847.4]
WARNING, no entry stored in dbm for [ENSG00000184669.9]
WARNING, no entry stored in dbm for [ENSG00000180770.3]
WARNING, no entry stored in dbm for [ENSG00000249419.1]
WARNING, no entry stored in dbm for [ENSG00000251396.7]
WARNING, no entry stored in dbm for [ENSG00000287458.1]
WARNING, no entry stored in dbm for [ENSG00000287757.1]
WARNING, no entry stored in dbm for [ENSG00000230606.11]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000260075.1]
WARNING, no entry stored in dbm for [ENSG00000207441.1]
WARNING, no entry stored in dbm for [ENSG00000228437.5]
WARNING, no entry stored in dbm for [ENSG00000272168.8]
WARNING, no entry stored in dbm for [ENSG00000214807.2]
WARNING, no entry stored in dbm for [ENSG00000226703.1]
WARNING, no entry stored in dbm for [ENSG00000266916.7]
WARNING, no entry stored in dbm for [ENSG00000228171.1]
WARNING, no entry stored in dbm for [ENSG00000275216.2]
WARNING, no entry stored in dbm for [ENSG00000240541.3]
WARNING, no entry stored in dbm for [ENSG00000200463.1]
WARNING, no entry stored in dbm for [ENSG00000250523.1]
WARNING, no entry stored in dbm for [ENSG00000244480.1]
WARNING, no entry stored in dbm for [ENSG00000274702.1]
WARNING, no entry stored in dbm for [ENSG00000231416.1]
WARNING, no entry stored in dbm for [ENSG00000235706.8]
WARNING, no entry stored in dbm for [ENSG00000233006.8]
WARNING, no entry stored in dbm for [ENSG00000279200.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000225552.1]
WARNING, no entry stored in dbm for [ENSG00000262039.1]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000249119.1]
WARNING, no entry stored in dbm for [ENSG00000287189.1]
WARNING, no entry stored in dbm for [ENSG00000205361.8]
WARNING, no entry stored in dbm for [ENSG00000210112.1]
WARNING, no entry stored in dbm for [ENSG00000186715.11]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000243479.3]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000267686.2]
WARNING, no entry stored in dbm for [ENSG00000284117.1]
WARNING, no entry stored in dbm for [ENSG00000228340.6]
WARNING, no entry stored in dbm for [ENSG00000284498.1]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000270069.1]
WARNING, no entry stored in dbm for [ENSG00000226179.6]
WARNING, no entry stored in dbm for [ENSG00000272894.5]
WARNING, no entry stored in dbm for [ENSG00000253716.6]
WARNING, no entry stored in dbm for [ENSG00000234327.8]
WARNING, no entry stored in dbm for [ENSG00000236595.1]
WARNING, no entry stored in dbm for [ENSG00000226277.2]
WARNING, no entry stored in dbm for [ENSG00000224597.10]
WARNING, no entry stored in dbm for [ENSG00000231863.2]
WARNING, no entry stored in dbm for [ENSG00000201623.1]
WARNING, no entry stored in dbm for [ENSG00000222449.1]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000214832.5]
WARNING, no entry stored in dbm for [ENSG00000283544.1]
WARNING, no entry stored in dbm for [ENSG00000239978.1]
WARNING, no entry stored in dbm for [ENSG00000284060.1]
WARNING, no entry stored in dbm for [ENSG00000264829.1]
WARNING, no entry stored in dbm for [ENSG00000235137.2]
WARNING, no entry stored in dbm for [ENSG00000213904.9]
WARNING, no entry stored in dbm for [ENSG00000255008.3]
WARNING, no entry stored in dbm for [ENSG00000255008.3]
WARNING, no entry stored in dbm for [ENSG00000231566.2]
WARNING, no entry stored in dbm for [ENSG00000228437.5]
WARNING, no entry stored in dbm for [ENSG00000271850.2]
WARNING, no entry stored in dbm for [ENSG00000259719.6]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000232190.3]
WARNING, no entry stored in dbm for [ENSG00000258732.1]
WARNING, no entry stored in dbm for [ENSG00000260186.5]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000261453.2]
WARNING, no entry stored in dbm for [ENSG00000235200.3]
WARNING, no entry stored in dbm for [ENSG00000168746.8]
WARNING, no entry stored in dbm for [ENSG00000231427.6]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000229981.8]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000204792.2]
WARNING, no entry stored in dbm for [ENSG00000203999.9]
WARNING, no entry stored in dbm for [ENSG00000261186.2]
WARNING, no entry stored in dbm for [ENSG00000175772.11]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000175772.11]
WARNING, no entry stored in dbm for [ENSG00000232225.6]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000237945.7]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000258279.4]
WARNING, no entry stored in dbm for [ENSG00000228221.6]
WARNING, no entry stored in dbm for [ENSG00000227036.8]
WARNING, no entry stored in dbm for [ENSG00000238121.6]
WARNING, no entry stored in dbm for [ENSG00000259072.2]
WARNING, no entry stored in dbm for [ENSG00000237460.3]
WARNING, no entry stored in dbm for [ENSG00000224699.9]
WARNING, no entry stored in dbm for [ENSG00000287929.1]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000257671.1]
WARNING, no entry stored in dbm for [ENSG00000214856.11]
WARNING, no entry stored in dbm for [ENSG00000263647.1]
WARNING, no entry stored in dbm for [ENSG00000257671.1]
WARNING, no entry stored in dbm for [ENSG00000260746.2]
WARNING, no entry stored in dbm for [ENSG00000250686.2]
WARNING, no entry stored in dbm for [ENSG00000242641.6]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000256440.1]
WARNING, no entry stored in dbm for [ENSG00000228252.9]
WARNING, no entry stored in dbm for [ENSG00000260469.3]
WARNING, no entry stored in dbm for [ENSG00000219747.1]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000253669.4]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000253223.1]
WARNING, no entry stored in dbm for [ENSG00000243188.1]
WARNING, no entry stored in dbm for [ENSG00000231711.2]
WARNING, no entry stored in dbm for [ENSG00000234705.2]
WARNING, no entry stored in dbm for [ENSG00000234705.2]
WARNING, no entry stored in dbm for [ENSG00000226803.9]
WARNING, no entry stored in dbm for [ENSG00000283050.2]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000280660.1]
WARNING, no entry stored in dbm for [ENSG00000220494.4]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000285867.1]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000237517.10]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000244097.1]
WARNING, no entry stored in dbm for [ENSG00000170089.15]
WARNING, no entry stored in dbm for [ENSG00000283050.2]
WARNING, no entry stored in dbm for [ENSG00000236117.1]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000228055.3]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000279222.1]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000268287.1]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000271913.7]
WARNING, no entry stored in dbm for [ENSG00000279036.1]
WARNING, no entry stored in dbm for [ENSG00000234690.7]
WARNING, no entry stored in dbm for [ENSG00000234690.7]
WARNING, no entry stored in dbm for [ENSG00000263335.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000248406.1]
WARNING, no entry stored in dbm for [ENSG00000262898.3]
WARNING, no entry stored in dbm for [ENSG00000277543.1]
WARNING, no entry stored in dbm for [ENSG00000259511.3]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000270111.3]
WARNING, no entry stored in dbm for [ENSG00000243746.1]
WARNING, no entry stored in dbm for [ENSG00000233821.1]
WARNING, no entry stored in dbm for [ENSG00000201428.1]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000269929.3]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000248079.3]
WARNING, no entry stored in dbm for [ENSG00000263724.2]
WARNING, no entry stored in dbm for [ENSG00000213187.3]
WARNING, no entry stored in dbm for [ENSG00000235706.8]
WARNING, no entry stored in dbm for [ENSG00000234714.1]
WARNING, no entry stored in dbm for [ENSG00000212978.6]
WARNING, no entry stored in dbm for [ENSG00000234637.1]
WARNING, no entry stored in dbm for [ENSG00000236206.2]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000260468.1]
WARNING, no entry stored in dbm for [ENSG00000276710.4]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000256906.1]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000235038.1]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000260750.7]
WARNING, no entry stored in dbm for [ENSG00000233293.1]
WARNING, no entry stored in dbm for [ENSG00000227195.11]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000227617.9]
WARNING, no entry stored in dbm for [ENSG00000272142.4]
WARNING, no entry stored in dbm for [ENSG00000225077.3]
WARNING, no entry stored in dbm for [ENSG00000233751.1]
WARNING, no entry stored in dbm for [ENSG00000231226.1]
WARNING, no entry stored in dbm for [ENSG00000215039.7]
WARNING, no entry stored in dbm for [ENSG00000287703.1]
WARNING, no entry stored in dbm for [ENSG00000228409.6]
WARNING, no entry stored in dbm for [ENSG00000242894.3]
WARNING, no entry stored in dbm for [ENSG00000205488.9]
WARNING, no entry stored in dbm for [ENSG00000249193.1]
WARNING, no entry stored in dbm for [ENSG00000186493.14]
WARNING, no entry stored in dbm for [ENSG00000257985.1]
WARNING, no entry stored in dbm for [ENSG00000248935.1]
WARNING, no entry stored in dbm for [ENSG00000236461.1]
WARNING, no entry stored in dbm for [ENSG00000205918.9]
WARNING, no entry stored in dbm for [ENSG00000245954.8]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000262400.1]
WARNING, no entry stored in dbm for [ENSG00000256128.6]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000279423.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000179766.19]
WARNING, no entry stored in dbm for [ENSG00000270855.1]
WARNING, no entry stored in dbm for [ENSG00000285848.1]
WARNING, no entry stored in dbm for [ENSG00000226510.1]
WARNING, no entry stored in dbm for [ENSG00000226835.3]
WARNING, no entry stored in dbm for [ENSG00000227110.7]
WARNING, no entry stored in dbm for [ENSG00000239437.3]
WARNING, no entry stored in dbm for [ENSG00000231290.6]
WARNING, no entry stored in dbm for [ENSG00000201813.1]
WARNING, no entry stored in dbm for [ENSG00000255111.1]
WARNING, no entry stored in dbm for [ENSG00000255111.1]
WARNING, no entry stored in dbm for [ENSG00000266602.2]
WARNING, no entry stored in dbm for [ENSG00000255689.1]
WARNING, no entry stored in dbm for [ENSG00000263551.6]
WARNING, no entry stored in dbm for [ENSG00000226043.2]
WARNING, no entry stored in dbm for [ENSG00000248994.2]
WARNING, no entry stored in dbm for [ENSG00000286017.1]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000240804.1]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000273018.7]
WARNING, no entry stored in dbm for [ENSG00000273204.1]
WARNING, no entry stored in dbm for [ENSG00000283317.1]
WARNING, no entry stored in dbm for [ENSG00000234329.1]
WARNING, no entry stored in dbm for [ENSG00000240522.1]
WARNING, no entry stored in dbm for [ENSG00000283360.1]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000240291.1]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000217801.10]
WARNING, no entry stored in dbm for [ENSG00000237356.7]
WARNING, no entry stored in dbm for [ENSG00000258561.2]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000235605.1]
WARNING, no entry stored in dbm for [ENSG00000259001.3]
WARNING, no entry stored in dbm for [ENSG00000203620.2]
WARNING, no entry stored in dbm for [ENSG00000234424.2]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000267369.1]
WARNING, no entry stored in dbm for [ENSG00000230729.1]
WARNING, no entry stored in dbm for [ENSG00000230729.1]
WARNING, no entry stored in dbm for [ENSG00000239665.8]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000224387.1]
WARNING, no entry stored in dbm for [ENSG00000230615.7]
WARNING, no entry stored in dbm for [ENSG00000233183.3]
WARNING, no entry stored in dbm for [ENSG00000272248.1]
WARNING, no entry stored in dbm for [ENSG00000287895.1]
WARNING, no entry stored in dbm for [ENSG00000257522.7]
WARNING, no entry stored in dbm for [ENSG00000229862.5]
WARNING, no entry stored in dbm for [ENSG00000285205.2]
WARNING, no entry stored in dbm for [ENSG00000224271.7]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000260425.1]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000215022.7]
WARNING, no entry stored in dbm for [ENSG00000273287.2]
WARNING, no entry stored in dbm for [ENSG00000273287.2]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000256120.2]
WARNING, no entry stored in dbm for [ENSG00000224204.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000255085.8]
WARNING, no entry stored in dbm for [ENSG00000248692.5]
WARNING, no entry stored in dbm for [ENSG00000228055.3]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000270231.4]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000270231.4]
WARNING, no entry stored in dbm for [ENSG00000283453.2]
WARNING, no entry stored in dbm for [ENSG00000283453.2]
WARNING, no entry stored in dbm for [ENSG00000223612.3]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000275976.5]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [ENSG00000275315.1]
WARNING, no entry stored in dbm for [ENSG00000233836.7]
WARNING, no entry stored in dbm for [ENSG00000254701.3]
WARNING, no entry stored in dbm for [ENSG00000282924.1]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000228409.6]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000264215.1]
WARNING, no entry stored in dbm for [ENSG00000255177.2]
WARNING, no entry stored in dbm for [ENSG00000257883.1]
WARNING, no entry stored in dbm for [ENSG00000257654.1]
WARNING, no entry stored in dbm for [ENSG00000280117.1]
WARNING, no entry stored in dbm for [ENSG00000248347.3]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000279391.1]
WARNING, no entry stored in dbm for [ENSG00000243199.1]
WARNING, no entry stored in dbm for [ENSG00000216754.2]
WARNING, no entry stored in dbm for [ENSG00000229717.3]
WARNING, no entry stored in dbm for [ENSG00000205890.3]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000260037.5]
WARNING, no entry stored in dbm for [ENSG00000267628.1]
WARNING, no entry stored in dbm for [ENSG00000253882.6]
WARNING, no entry stored in dbm for [ENSG00000266677.1]
WARNING, no entry stored in dbm for [ENSG00000271680.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000287098.1]
WARNING, no entry stored in dbm for [ENSG00000188365.3]
WARNING, no entry stored in dbm for [ENSG00000205976.4]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000279259.1]
WARNING, no entry stored in dbm for [ENSG00000262580.5]
WARNING, no entry stored in dbm for [ENSG00000259941.1]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000285744.1]
WARNING, no entry stored in dbm for [ENSG00000266820.1]
WARNING, no entry stored in dbm for [ENSG00000272247.1]
WARNING, no entry stored in dbm for [ENSG00000278266.1]
WARNING, no entry stored in dbm for [ENSG00000266718.2]
WARNING, no entry stored in dbm for [ENSG00000258365.1]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000230796.1]
WARNING, no entry stored in dbm for [ENSG00000197320.5]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000234337.4]
WARNING, no entry stored in dbm for [ENSG00000223489.1]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000260838.3]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000230747.1]
WARNING, no entry stored in dbm for [ENSG00000287858.1]
WARNING, no entry stored in dbm for [ENSG00000266573.6]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000212978.6]
WARNING, no entry stored in dbm for [ENSG00000212978.6]
WARNING, no entry stored in dbm for [ENSG00000228206.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000288604.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000276206.1]
WARNING, no entry stored in dbm for [ENSG00000232499.2]
WARNING, no entry stored in dbm for [ENSG00000267723.1]
WARNING, no entry stored in dbm for [ENSG00000197813.6]
WARNING, no entry stored in dbm for [ENSG00000267598.1]
WARNING, no entry stored in dbm for [ENSG00000267598.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000241281.1]
WARNING, no entry stored in dbm for [ENSG00000279592.1]
WARNING, no entry stored in dbm for [ENSG00000255177.2]
WARNING, no entry stored in dbm for [ENSG00000256615.1]
WARNING, no entry stored in dbm for [ENSG00000255644.1]
WARNING, no entry stored in dbm for [ENSG00000226266.6]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000276548.1]
WARNING, no entry stored in dbm for [ENSG00000248709.3]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000257022.1]
WARNING, no entry stored in dbm for [ENSG00000257261.6]
WARNING, no entry stored in dbm for [ENSG00000257261.6]
WARNING, no entry stored in dbm for [ENSG00000161132.6]
WARNING, no entry stored in dbm for [ENSG00000161132.6]
WARNING, no entry stored in dbm for [ENSG00000279190.1]
WARNING, no entry stored in dbm for [ENSG00000255595.5]
WARNING, no entry stored in dbm for [ENSG00000283214.1]
WARNING, no entry stored in dbm for [ENSG00000206129.4]
WARNING, no entry stored in dbm for [ENSG00000226824.7]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000241278.1]
WARNING, no entry stored in dbm for [ENSG00000215458.8]
WARNING, no entry stored in dbm for [ENSG00000242908.6]
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2234.


	* STAR-Fusion complete.  See output: /tmp/nxf.RZQ5uNvkCA/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)