File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c02a54a9abe693ac61c58600f0f734/.command.log
Size
7.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-6cc13c-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/a6a65a6d081f7a278285256daacdaf/aih-tih-sc-6cc13c-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c02a54a9abe693ac61c58600f0f734/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/a21529d12e1ad9649e480093961c9a/aih-tih-sc-6cc13c-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c02a54a9abe693ac61c58600f0f734/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
GSDMB--SMTN
starfusion
arriba
APTX--RIMS2
starfusion
arriba
TMTC2--ANO2
starfusion
arriba
EXOSC3--FBXO10
starfusion
arriba
STARD3--NEUROD2
starfusion
arriba
KIAA2026--EXOSC3
starfusion
arriba
GRHL2--CNGB3
starfusion
arriba
ADCYAP1--AP000829.1
starfusion
AFF3--REV1
starfusion
arriba
GUSB--NAIP
starfusion
DCAF10--DMAC1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
SH3GL1--LRRC8E
starfusion
arriba
TLK2--AC240565.1
starfusion
CATSPERB--TC2N
starfusion
WDR89--PPP2R5E
starfusion
STX16--NPEPL1
starfusion
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA5--PCDHA13
arriba
PCDHA5--PCDHAC1
arriba
PCDHA5--PCDHAC2
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
INTS8--RN7SL685P
arriba
INTS8--FLJ42969
arriba
NPHP3--ACAD11
arriba
TTC39B--APTX
arriba
PVT1--RIMS2
arriba
TACC1P1--TACC1P1
arriba
MTND1P18--TACC1P1
arriba

  0%|          | 0/34 [00:00<?, ?it/s]
Processing GSDMB--SMTN:   0%|          | 0/34 [00:00<?, ?it/s]
Processing GSDMB--SMTN:   3%|▎         | 1/34 [00:00<00:03,  9.26it/s]
Processing APTX--RIMS2:   3%|▎         | 1/34 [00:00<00:03,  9.26it/s]
Processing APTX--RIMS2:   6%|▌         | 2/34 [00:00<00:03,  9.48it/s]
Processing TMTC2--ANO2:   6%|▌         | 2/34 [00:00<00:03,  9.48it/s]
Processing TMTC2--ANO2:   9%|▉         | 3/34 [00:00<00:03,  9.56it/s]
Processing EXOSC3--FBXO10:   9%|▉         | 3/34 [00:00<00:03,  9.56it/s]
Processing EXOSC3--FBXO10:  12%|█▏        | 4/34 [00:00<00:03,  9.60it/s]
Processing STARD3--NEUROD2:  12%|█▏        | 4/34 [00:00<00:03,  9.60it/s]
Processing STARD3--NEUROD2:  15%|█▍        | 5/34 [00:00<00:03,  9.62it/s]
Processing KIAA2026--EXOSC3:  15%|█▍        | 5/34 [00:00<00:03,  9.62it/s]
Processing KIAA2026--EXOSC3:  18%|█▊        | 6/34 [00:00<00:02,  9.63it/s]
Processing GRHL2--CNGB3:  18%|█▊        | 6/34 [00:00<00:02,  9.63it/s]    
Processing GRHL2--CNGB3:  21%|██        | 7/34 [00:00<00:02,  9.64it/s]
Processing ADCYAP1--AP000829.1:  21%|██        | 7/34 [00:00<00:02,  9.64it/s]
Processing ADCYAP1--AP000829.1:  24%|██▎       | 8/34 [00:00<00:02,  9.64it/s]
Processing AFF3--REV1:  24%|██▎       | 8/34 [00:00<00:02,  9.64it/s]         
Processing AFF3--REV1:  26%|██▋       | 9/34 [00:00<00:02,  9.64it/s]
Processing GUSB--NAIP:  26%|██▋       | 9/34 [00:00<00:02,  9.64it/s]
Processing GUSB--NAIP:  29%|██▉       | 10/34 [00:01<00:02,  9.65it/s]
Processing DCAF10--DMAC1:  29%|██▉       | 10/34 [00:01<00:02,  9.65it/s]
Processing DCAF10--DMAC1:  32%|███▏      | 11/34 [00:01<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  32%|███▏      | 11/34 [00:01<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  35%|███▌      | 12/34 [00:01<00:02,  9.65it/s]
Processing SH3GL1--LRRC8E:  35%|███▌      | 12/34 [00:01<00:02,  9.65it/s]    
Processing SH3GL1--LRRC8E:  38%|███▊      | 13/34 [00:01<00:02,  9.65it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 13/34 [00:01<00:02,  9.65it/s]
Processing TLK2--AC240565.1:  41%|████      | 14/34 [00:01<00:02,  9.65it/s]
Processing CATSPERB--TC2N:  41%|████      | 14/34 [00:01<00:02,  9.65it/s]  
Processing CATSPERB--TC2N:  44%|████▍     | 15/34 [00:01<00:01,  9.65it/s]
Processing WDR89--PPP2R5E:  44%|████▍     | 15/34 [00:01<00:01,  9.65it/s]
Processing WDR89--PPP2R5E:  47%|████▋     | 16/34 [00:01<00:01,  9.65it/s]
Processing STX16--NPEPL1:  47%|████▋     | 16/34 [00:01<00:01,  9.65it/s] 
Processing STX16--NPEPL1:  50%|█████     | 17/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHA13:  50%|█████     | 17/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHA13:  53%|█████▎    | 18/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  53%|█████▎    | 18/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  56%|█████▌    | 19/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC2:  56%|█████▌    | 19/34 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC2:  59%|█████▉    | 20/34 [00:02<00:01,  9.65it/s]
Processing PCDHA5--PCDHA13:  59%|█████▉    | 20/34 [00:02<00:01,  9.65it/s]
Processing PCDHA5--PCDHA13:  62%|██████▏   | 21/34 [00:02<00:01,  9.66it/s]
Processing PCDHA5--PCDHAC1:  62%|██████▏   | 21/34 [00:02<00:01,  9.66it/s]
Processing PCDHA5--PCDHAC1:  65%|██████▍   | 22/34 [00:02<00:01,  9.66it/s]
Processing PCDHA5--PCDHAC2:  65%|██████▍   | 22/34 [00:02<00:01,  9.66it/s]
Processing PCDHA5--PCDHAC2:  68%|██████▊   | 23/34 [00:02<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  68%|██████▊   | 23/34 [00:02<00:01,  9.65it/s]  
Processing TVP23C--CDRT4:  71%|███████   | 24/34 [00:02<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC1:  71%|███████   | 24/34 [00:02<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC1:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  79%|███████▉  | 27/34 [00:02<00:00,  9.65it/s]
Processing INTS8--RN7SL685P:  79%|███████▉  | 27/34 [00:02<00:00,  9.65it/s]
Processing INTS8--RN7SL685P:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing INTS8--FLJ42969:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s] 
Processing INTS8--FLJ42969:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]
Processing NPHP3--ACAD11:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]  
Processing NPHP3--ACAD11:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s]
Processing TTC39B--APTX:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s] 
Processing TTC39B--APTX:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s]
Processing PVT1--RIMS2:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s] 
Processing PVT1--RIMS2:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing TACC1P1--TACC1P1:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing TACC1P1--TACC1P1:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing MTND1P18--TACC1P1:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing MTND1P18--TACC1P1: 100%|██████████| 34/34 [00:03<00:00,  9.65it/s]
Processing MTND1P18--TACC1P1: 100%|██████████| 34/34 [00:03<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory