File Info
- Filename
- aih-tih-sc-6cc13c-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c02a54a9abe693ac61c58600f0f734/aih-tih-sc-6cc13c-R1_A23YTGFLT4_1.fusions.csv
- Size
- 8.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-6cc13c-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| GSDMB--SMTN | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:39917082#chr22:31087965,reading-frame: out-of-frame,type: translocation,split_reads1: 56,split_reads2: 193,discordant_mates: 1,coverage1: 22613,coverage2: 2279,confidence: high | position: chr17:39917082:-#chr22:31087965:+,junction_reads: 265,spanning_reads: 1,ffmp: 0.896 | |
| APTX--RIMS2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:32989759#chr8:103885298,reading-frame: out-of-frame,type: translocation,split_reads1: 126,split_reads2: 43,discordant_mates: 1,coverage1: 4186,coverage2: 349,confidence: high | position: chr9:32989759:-#chr8:103885298:+,junction_reads: 170,spanning_reads: 1,ffmp: 0.576 | |
| TMTC2--ANO2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:82687669#chr12:5750970,reading-frame: in-frame,type: inversion,split_reads1: 46,split_reads2: 70,discordant_mates: 0,coverage1: 1096,coverage2: 226,confidence: high | position: chr12:82687669:+#chr12:5750970:-,junction_reads: 139,spanning_reads: 1,ffmp: 0.4716 | |
| EXOSC3--FBXO10 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:37783914#chr9:37518438,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 63,split_reads2: 54,discordant_mates: 0,coverage1: 2678,coverage2: 692,confidence: high | position: chr9:37783914:-#chr9:37518438:-,junction_reads: 121,spanning_reads: 0,ffmp: 0.4076 | |
| STARD3--NEUROD2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:39637231#chr17:39606604,reading-frame: .,type: inversion,split_reads1: 3,split_reads2: 73,discordant_mates: 0,coverage1: 11841,coverage2: 4739,confidence: high | position: chr17:39637231:+#chr17:39606604:-,junction_reads: 77,spanning_reads: 0,ffmp: 0.2594 | |
| KIAA2026--EXOSC3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:6007195#chr9:37784063,reading-frame: out-of-frame,type: duplication,split_reads1: 36,split_reads2: 39,discordant_mates: 0,coverage1: 939,coverage2: 2216,confidence: high | position: chr9:6007195:-#chr9:37784063:-,junction_reads: 77,spanning_reads: 0,ffmp: 0.2594 | |
| GRHL2--CNGB3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:101664518#chr8:86726657,reading-frame: out-of-frame,type: inversion,split_reads1: 40,split_reads2: 33,discordant_mates: 0,coverage1: 1517,coverage2: 112,confidence: high | position: chr8:101664518:+#chr8:86726657:-,junction_reads: 75,spanning_reads: 0,ffmp: 0.2526 | |
| ADCYAP1--AP000829.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:908363:+#chr18:1159179:+,junction_reads: 44,spanning_reads: 0,ffmp: 0.1482 | ||
| AFF3--REV1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:100006632#chr2:99464985,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 20,discordant_mates: 0,coverage1: 1044,coverage2: 565,confidence: high | position: chr2:100006632:-#chr2:99464985:-,junction_reads: 37,spanning_reads: 0,ffmp: 0.1246 | |
| GUSB--NAIP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:65964323:-#chr5:71003857:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0237 | ||
| DCAF10--DMAC1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:37819401#chr9:7798637,reading-frame: out-of-frame,type: inversion,split_reads1: 14,split_reads2: 8,discordant_mates: 0,coverage1: 1908,coverage2: 2311,confidence: high | position: chr9:37819401:+#chr9:7798637:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0741 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.0525 | ||
| SH3GL1--LRRC8E | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:4361679#chr19:7895599,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 7,discordant_mates: 0,coverage1: 2231,coverage2: 706,confidence: high | position: chr19:4361679:-#chr19:7895599:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0505 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0097 | ||
| CATSPERB--TC2N | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr14:91719418:-#chr14:91802421:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | |
| WDR89--PPP2R5E | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:63641804:-#chr14:63415232:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 52,split_reads2: 54,discordant_mates: 2,coverage1: 1816,coverage2: 328,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | |
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 41,split_reads2: 71,discordant_mates: 1,coverage1: 333,coverage2: 1259,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 41,split_reads2: 71,discordant_mates: 1,coverage1: 333,coverage2: 1259,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 41,split_reads2: 71,discordant_mates: 1,coverage1: 333,coverage2: 1259,confidence: high | ||
| PCDHA5--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 77,discordant_mates: 0,coverage1: 528,coverage2: 1259,confidence: high | ||
| PCDHA5--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 77,discordant_mates: 0,coverage1: 528,coverage2: 1259,confidence: high | ||
| PCDHA5--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 77,discordant_mates: 0,coverage1: 528,coverage2: 1259,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 42,split_reads2: 40,discordant_mates: 0,coverage1: 465,coverage2: 250,confidence: high | |
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 24,split_reads2: 33,discordant_mates: 1,coverage1: 298,coverage2: 1259,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 24,split_reads2: 33,discordant_mates: 1,coverage1: 298,coverage2: 1259,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 24,split_reads2: 33,discordant_mates: 1,coverage1: 298,coverage2: 1259,confidence: high | ||
| INTS8--RN7SL685P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:94832174#chr8:100975463,reading-frame: out-of-frame,type: deletion,split_reads1: 28,split_reads2: 3,discordant_mates: 0,coverage1: 1543,coverage2: 3,confidence: high | ||
| INTS8--FLJ42969 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:94832174#chr8:100975463,reading-frame: out-of-frame,type: deletion,split_reads1: 28,split_reads2: 3,discordant_mates: 0,coverage1: 1543,coverage2: 3,confidence: high | ||
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 8,discordant_mates: 0,coverage1: 280,coverage2: 651,confidence: high | ||
| TTC39B--APTX | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:15267914#chr9:32966773,reading-frame: out-of-frame,type: duplication,split_reads1: 12,split_reads2: 2,discordant_mates: 1,coverage1: 539,coverage2: 29,confidence: high | ||
| PVT1--RIMS2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:127794734#chr8:103697086,reading-frame: .,type: duplication,split_reads1: 4,split_reads2: 7,discordant_mates: 0,coverage1: 21,coverage2: 91,confidence: high | ||
| TACC1P1--TACC1P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:37587496#chr10:37528481,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 8,discordant_mates: 1,coverage1: 14,coverage2: 430,confidence: high | ||
| MTND1P18--TACC1P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:37587496#chr10:37528481,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 8,discordant_mates: 1,coverage1: 14,coverage2: 430,confidence: high |
35 rows