File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9de68f37e8e1651de23c5b25ff2315/.command.log
Size
2.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f7ac14-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9de68f37e8e1651de23c5b25ff2315/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9de68f37e8e1651de23c5b25ff2315/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/116ed83b84ca6634239e04d1b818ab/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/885874c2f39e6fd432ad59de1a63a0/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/9 [00:00<?, ?it/s]GPC1--IMPDH1P10
starfusion
arriba
GPC1--CFLAR-AS1
starfusion
arriba
ING2--LINC02336
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC025884.2--IGH-@-ext
starfusion
BCL3--BCL3
arriba
GPC1--CFLAR
arriba
TVP23C--CDRT4
arriba
DIDO1--LINC01749
arriba

Processing GPC1--IMPDH1P10:   0%|          | 0/9 [00:00<?, ?it/s]
Processing GPC1--IMPDH1P10:  11%|█         | 1/9 [00:00<00:00,  9.22it/s]
Processing GPC1--CFLAR-AS1:  11%|█         | 1/9 [00:00<00:00,  9.22it/s]
Processing GPC1--CFLAR-AS1:  22%|██▏       | 2/9 [00:00<00:00,  9.44it/s]
Processing ING2--LINC02336:  22%|██▏       | 2/9 [00:00<00:00,  9.44it/s]
Processing ING2--LINC02336:  33%|███▎      | 3/9 [00:00<00:00,  9.53it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 3/9 [00:00<00:00,  9.53it/s]
Processing TLK2P1--AC110079.1:  44%|████▍     | 4/9 [00:00<00:00,  9.56it/s]
Processing AC025884.2--IGH-@-ext:  44%|████▍     | 4/9 [00:00<00:00,  9.56it/s]
Processing AC025884.2--IGH-@-ext:  56%|█████▌    | 5/9 [00:00<00:00,  9.59it/s]
Processing BCL3--BCL3:  56%|█████▌    | 5/9 [00:00<00:00,  9.59it/s]           
Processing BCL3--BCL3:  67%|██████▋   | 6/9 [00:00<00:00,  9.61it/s]
Processing GPC1--CFLAR:  67%|██████▋   | 6/9 [00:00<00:00,  9.61it/s]
Processing GPC1--CFLAR:  78%|███████▊  | 7/9 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  78%|███████▊  | 7/9 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  89%|████████▉ | 8/9 [00:00<00:00,  9.62it/s]
Processing DIDO1--LINC01749:  89%|████████▉ | 8/9 [00:00<00:00,  9.62it/s]
Processing DIDO1--LINC01749: 100%|██████████| 9/9 [00:00<00:00,  9.63it/s]
Processing DIDO1--LINC01749: 100%|██████████| 9/9 [00:00<00:00,  9.58it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory