Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/e836d09b523bf6fdab43eb7047bc1d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/e836d09b523bf6fdab43eb7047bc1d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/0a3f9259913c858f73c5f0f697a9fb/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/d0a9f2f174d1d61cfaf2aa2164384e/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (12484852) splicing reads. 221064 splicing junctions. 173715 known splicing junctions. 47349 novel splicing junctions.
sampling 10% (24969704) splicing reads. 248689 splicing junctions. 182319 known splicing junctions. 66370 novel splicing junctions.
sampling 15% (37454557) splicing reads. 263611 splicing junctions. 186207 known splicing junctions. 77404 novel splicing junctions.
sampling 20% (49939409) splicing reads. 272921 splicing junctions. 188374 known splicing junctions. 84547 novel splicing junctions.
sampling 25% (62424261) splicing reads. 279449 splicing junctions. 189821 known splicing junctions. 89628 novel splicing junctions.
sampling 30% (74909114) splicing reads. 284419 splicing junctions. 190860 known splicing junctions. 93559 novel splicing junctions.
sampling 35% (87393966) splicing reads. 288271 splicing junctions. 191586 known splicing junctions. 96685 novel splicing junctions.
sampling 40% (99878818) splicing reads. 291226 splicing junctions. 192151 known splicing junctions. 99075 novel splicing junctions.
sampling 45% (112363671) splicing reads. 293659 splicing junctions. 192601 known splicing junctions. 101058 novel splicing junctions.
sampling 50% (124848523) splicing reads. 295702 splicing junctions. 192982 known splicing junctions. 102720 novel splicing junctions.
sampling 55% (137333375) splicing reads. 297442 splicing junctions. 193322 known splicing junctions. 104120 novel splicing junctions.
sampling 60% (149818228) splicing reads. 298941 splicing junctions. 193583 known splicing junctions. 105358 novel splicing junctions.
sampling 65% (162303080) splicing reads. 300180 splicing junctions. 193810 known splicing junctions. 106370 novel splicing junctions.
sampling 70% (174787932) splicing reads. 301240 splicing junctions. 193974 known splicing junctions. 107266 novel splicing junctions.
sampling 75% (187272785) splicing reads. 302084 splicing junctions. 194120 known splicing junctions. 107964 novel splicing junctions.
sampling 80% (199757637) splicing reads. 302792 splicing junctions. 194243 known splicing junctions. 108549 novel splicing junctions.
sampling 85% (212242489) splicing reads. 303384 splicing junctions. 194340 known splicing junctions. 109044 novel splicing junctions.
sampling 90% (224727342) splicing reads. 303820 splicing junctions. 194411 known splicing junctions. 109409 novel splicing junctions.
sampling 95% (237212194) splicing reads. 304148 splicing junctions. 194471 known splicing junctions. 109677 novel splicing junctions.
sampling 100% (249697047) splicing reads. 304348 splicing junctions. 194490 known splicing junctions. 109858 novel splicing junctions.
null device 
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