Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2259e7b87ff0d76682648d964182c4/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/05d1bba6bd2966cdbc714f1b9f725c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/05d1bba6bd2966cdbc714f1b9f725c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/e5071313593f576507d84e45f26f4d/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TATDN1--NSMCE2
starfusion
arriba
FRMD6--ABHD12B
starfusion
arriba
MAP4K5--NSMCE2
starfusion
arriba
SAA2--MT-RNR2
starfusion
TLK2P1--AC110079.1
starfusion
NDUFA9--AC092745.5
starfusion
HSD17B4--MT-RNR2
starfusion
TLK2--AC240565.1
starfusion
ACTBP6--ACTB
starfusion
CLIC2--BX571846.1
starfusion
arriba
ATAD2--AL365295.1
arriba
ATAD2--AL138479.1
arriba
ATAD2--MIR5580
arriba
DNM2--ADGRE4P
arriba
NDUFA9--AC024255.1
arriba
NDUFA9--AC012150.1
arriba
PYGL--FRMD6
arriba
TVP23C--CDRT4
arriba
CNST--SMYD3
arriba
FTO--FRG1GP
arriba
FTO--U6
arriba
AC015911.9--SLFN12L
arriba
KLF15--AC063919.1
arriba
KLRC4--KLRK1
arriba
FTO--MIR663AHG
arriba
FTO--FRG1CP
arriba
FRMD6--LINC00964
arriba
IGF1R--FAM169B
arriba
IGF1R--IRAIN
arriba
0%| | 0/29 [00:00<?, ?it/s]
Processing TATDN1--NSMCE2: 0%| | 0/29 [00:00<?, ?it/s]
Processing TATDN1--NSMCE2: 3%|▎ | 1/29 [00:00<00:03, 9.21it/s]
Processing FRMD6--ABHD12B: 3%|▎ | 1/29 [00:00<00:03, 9.21it/s]
Processing FRMD6--ABHD12B: 7%|▋ | 2/29 [00:00<00:02, 9.45it/s]
Processing MAP4K5--NSMCE2: 7%|▋ | 2/29 [00:00<00:02, 9.45it/s]
Processing MAP4K5--NSMCE2: 10%|█ | 3/29 [00:00<00:02, 9.54it/s]
Processing SAA2--MT-RNR2: 10%|█ | 3/29 [00:00<00:02, 9.54it/s]
Processing SAA2--MT-RNR2: 14%|█▍ | 4/29 [00:00<00:02, 9.58it/s]
Processing TLK2P1--AC110079.1: 14%|█▍ | 4/29 [00:00<00:02, 9.58it/s]
Processing TLK2P1--AC110079.1: 17%|█▋ | 5/29 [00:00<00:02, 9.60it/s]
Processing NDUFA9--AC092745.5: 17%|█▋ | 5/29 [00:00<00:02, 9.60it/s]
Processing NDUFA9--AC092745.5: 21%|██ | 6/29 [00:00<00:02, 9.61it/s]
Processing HSD17B4--MT-RNR2: 21%|██ | 6/29 [00:00<00:02, 9.61it/s]
Processing HSD17B4--MT-RNR2: 24%|██▍ | 7/29 [00:00<00:02, 9.62it/s]
Processing TLK2--AC240565.1: 24%|██▍ | 7/29 [00:00<00:02, 9.62it/s]
Processing TLK2--AC240565.1: 28%|██▊ | 8/29 [00:00<00:02, 9.63it/s]
Processing ACTBP6--ACTB: 28%|██▊ | 8/29 [00:00<00:02, 9.63it/s]
Processing ACTBP6--ACTB: 31%|███ | 9/29 [00:00<00:02, 9.63it/s]
Processing CLIC2--BX571846.1: 31%|███ | 9/29 [00:00<00:02, 9.63it/s]
Processing CLIC2--BX571846.1: 34%|███▍ | 10/29 [00:01<00:01, 9.63it/s]
Processing ATAD2--AL365295.1: 34%|███▍ | 10/29 [00:01<00:01, 9.63it/s]
Processing ATAD2--AL365295.1: 38%|███▊ | 11/29 [00:01<00:01, 9.64it/s]
Processing ATAD2--AL138479.1: 38%|███▊ | 11/29 [00:01<00:01, 9.64it/s]
Processing ATAD2--AL138479.1: 41%|████▏ | 12/29 [00:01<00:01, 9.64it/s]
Processing ATAD2--MIR5580: 41%|████▏ | 12/29 [00:01<00:01, 9.64it/s]
Processing ATAD2--MIR5580: 45%|████▍ | 13/29 [00:01<00:01, 9.64it/s]
Processing DNM2--ADGRE4P: 45%|████▍ | 13/29 [00:01<00:01, 9.64it/s]
Processing DNM2--ADGRE4P: 48%|████▊ | 14/29 [00:01<00:01, 9.64it/s]
Processing NDUFA9--AC024255.1: 48%|████▊ | 14/29 [00:01<00:01, 9.64it/s]
Processing NDUFA9--AC024255.1: 52%|█████▏ | 15/29 [00:01<00:01, 9.64it/s]
Processing NDUFA9--AC012150.1: 52%|█████▏ | 15/29 [00:01<00:01, 9.64it/s]
Processing NDUFA9--AC012150.1: 55%|█████▌ | 16/29 [00:01<00:01, 9.64it/s]
Processing PYGL--FRMD6: 55%|█████▌ | 16/29 [00:01<00:01, 9.64it/s]
Processing PYGL--FRMD6: 59%|█████▊ | 17/29 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 59%|█████▊ | 17/29 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 62%|██████▏ | 18/29 [00:01<00:01, 9.64it/s]
Processing CNST--SMYD3: 62%|██████▏ | 18/29 [00:01<00:01, 9.64it/s]
Processing CNST--SMYD3: 66%|██████▌ | 19/29 [00:01<00:01, 9.64it/s]
Processing FTO--FRG1GP: 66%|██████▌ | 19/29 [00:01<00:01, 9.64it/s]
Processing FTO--FRG1GP: 69%|██████▉ | 20/29 [00:02<00:00, 9.63it/s]
Processing FTO--U6: 69%|██████▉ | 20/29 [00:02<00:00, 9.63it/s]
Processing FTO--U6: 72%|███████▏ | 21/29 [00:02<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 72%|███████▏ | 21/29 [00:02<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 76%|███████▌ | 22/29 [00:02<00:00, 9.63it/s]
Processing KLF15--AC063919.1: 76%|███████▌ | 22/29 [00:02<00:00, 9.63it/s]
Processing KLF15--AC063919.1: 79%|███████▉ | 23/29 [00:02<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 79%|███████▉ | 23/29 [00:02<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 83%|████████▎ | 24/29 [00:02<00:00, 9.63it/s]
Processing FTO--MIR663AHG: 83%|████████▎ | 24/29 [00:02<00:00, 9.63it/s]
Processing FTO--MIR663AHG: 86%|████████▌ | 25/29 [00:02<00:00, 9.64it/s]
Processing FTO--FRG1CP: 86%|████████▌ | 25/29 [00:02<00:00, 9.64it/s]
Processing FTO--FRG1CP: 90%|████████▉ | 26/29 [00:02<00:00, 9.63it/s]
Processing FRMD6--LINC00964: 90%|████████▉ | 26/29 [00:02<00:00, 9.63it/s]
Processing FRMD6--LINC00964: 93%|█████████▎| 27/29 [00:02<00:00, 9.63it/s]
Processing IGF1R--FAM169B: 93%|█████████▎| 27/29 [00:02<00:00, 9.63it/s]
Processing IGF1R--FAM169B: 97%|█████████▋| 28/29 [00:02<00:00, 9.63it/s]
Processing IGF1R--IRAIN: 97%|█████████▋| 28/29 [00:02<00:00, 9.63it/s]
Processing IGF1R--IRAIN: 100%|██████████| 29/29 [00:03<00:00, 9.63it/s]
Processing IGF1R--IRAIN: 100%|██████████| 29/29 [00:03<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory