Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2259e7b87ff0d76682648d964182c4/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/05d1bba6bd2966cdbc714f1b9f725c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/05d1bba6bd2966cdbc714f1b9f725c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/e5071313593f576507d84e45f26f4d/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TATDN1--NSMCE2
starfusion
arriba
FRMD6--ABHD12B
starfusion
arriba
MAP4K5--NSMCE2
starfusion
arriba
SAA2--MT-RNR2
starfusion
TLK2P1--AC110079.1
starfusion
NDUFA9--AC092745.5
starfusion
HSD17B4--MT-RNR2
starfusion
TLK2--AC240565.1
starfusion
ACTBP6--ACTB
starfusion
CLIC2--BX571846.1
starfusion
arriba
ATAD2--AL365295.1
arriba
ATAD2--AL138479.1
arriba
ATAD2--MIR5580
arriba
DNM2--ADGRE4P
arriba
NDUFA9--AC024255.1
arriba
NDUFA9--AC012150.1
arriba
PYGL--FRMD6
arriba
TVP23C--CDRT4
arriba
CNST--SMYD3
arriba
FTO--FRG1GP
arriba
FTO--U6
arriba
AC015911.9--SLFN12L
arriba
KLF15--AC063919.1
arriba
KLRC4--KLRK1
arriba
FTO--MIR663AHG
arriba
FTO--FRG1CP
arriba
FRMD6--LINC00964
arriba
IGF1R--FAM169B
arriba
IGF1R--IRAIN
arriba

  0%|          | 0/29 [00:00<?, ?it/s]
Processing TATDN1--NSMCE2:   0%|          | 0/29 [00:00<?, ?it/s]
Processing TATDN1--NSMCE2:   3%|▎         | 1/29 [00:00<00:03,  9.21it/s]
Processing FRMD6--ABHD12B:   3%|▎         | 1/29 [00:00<00:03,  9.21it/s]
Processing FRMD6--ABHD12B:   7%|▋         | 2/29 [00:00<00:02,  9.45it/s]
Processing MAP4K5--NSMCE2:   7%|▋         | 2/29 [00:00<00:02,  9.45it/s]
Processing MAP4K5--NSMCE2:  10%|█         | 3/29 [00:00<00:02,  9.54it/s]
Processing SAA2--MT-RNR2:  10%|█         | 3/29 [00:00<00:02,  9.54it/s] 
Processing SAA2--MT-RNR2:  14%|█▍        | 4/29 [00:00<00:02,  9.58it/s]
Processing TLK2P1--AC110079.1:  14%|█▍        | 4/29 [00:00<00:02,  9.58it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 5/29 [00:00<00:02,  9.60it/s]
Processing NDUFA9--AC092745.5:  17%|█▋        | 5/29 [00:00<00:02,  9.60it/s]
Processing NDUFA9--AC092745.5:  21%|██        | 6/29 [00:00<00:02,  9.61it/s]
Processing HSD17B4--MT-RNR2:  21%|██        | 6/29 [00:00<00:02,  9.61it/s]  
Processing HSD17B4--MT-RNR2:  24%|██▍       | 7/29 [00:00<00:02,  9.62it/s]
Processing TLK2--AC240565.1:  24%|██▍       | 7/29 [00:00<00:02,  9.62it/s]
Processing TLK2--AC240565.1:  28%|██▊       | 8/29 [00:00<00:02,  9.63it/s]
Processing ACTBP6--ACTB:  28%|██▊       | 8/29 [00:00<00:02,  9.63it/s]    
Processing ACTBP6--ACTB:  31%|███       | 9/29 [00:00<00:02,  9.63it/s]
Processing CLIC2--BX571846.1:  31%|███       | 9/29 [00:00<00:02,  9.63it/s]
Processing CLIC2--BX571846.1:  34%|███▍      | 10/29 [00:01<00:01,  9.63it/s]
Processing ATAD2--AL365295.1:  34%|███▍      | 10/29 [00:01<00:01,  9.63it/s]
Processing ATAD2--AL365295.1:  38%|███▊      | 11/29 [00:01<00:01,  9.64it/s]
Processing ATAD2--AL138479.1:  38%|███▊      | 11/29 [00:01<00:01,  9.64it/s]
Processing ATAD2--AL138479.1:  41%|████▏     | 12/29 [00:01<00:01,  9.64it/s]
Processing ATAD2--MIR5580:  41%|████▏     | 12/29 [00:01<00:01,  9.64it/s]   
Processing ATAD2--MIR5580:  45%|████▍     | 13/29 [00:01<00:01,  9.64it/s]
Processing DNM2--ADGRE4P:  45%|████▍     | 13/29 [00:01<00:01,  9.64it/s] 
Processing DNM2--ADGRE4P:  48%|████▊     | 14/29 [00:01<00:01,  9.64it/s]
Processing NDUFA9--AC024255.1:  48%|████▊     | 14/29 [00:01<00:01,  9.64it/s]
Processing NDUFA9--AC024255.1:  52%|█████▏    | 15/29 [00:01<00:01,  9.64it/s]
Processing NDUFA9--AC012150.1:  52%|█████▏    | 15/29 [00:01<00:01,  9.64it/s]
Processing NDUFA9--AC012150.1:  55%|█████▌    | 16/29 [00:01<00:01,  9.64it/s]
Processing PYGL--FRMD6:  55%|█████▌    | 16/29 [00:01<00:01,  9.64it/s]       
Processing PYGL--FRMD6:  59%|█████▊    | 17/29 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  59%|█████▊    | 17/29 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  62%|██████▏   | 18/29 [00:01<00:01,  9.64it/s]
Processing CNST--SMYD3:  62%|██████▏   | 18/29 [00:01<00:01,  9.64it/s]  
Processing CNST--SMYD3:  66%|██████▌   | 19/29 [00:01<00:01,  9.64it/s]
Processing FTO--FRG1GP:  66%|██████▌   | 19/29 [00:01<00:01,  9.64it/s]
Processing FTO--FRG1GP:  69%|██████▉   | 20/29 [00:02<00:00,  9.63it/s]
Processing FTO--U6:  69%|██████▉   | 20/29 [00:02<00:00,  9.63it/s]    
Processing FTO--U6:  72%|███████▏  | 21/29 [00:02<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  72%|███████▏  | 21/29 [00:02<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  76%|███████▌  | 22/29 [00:02<00:00,  9.63it/s]
Processing KLF15--AC063919.1:  76%|███████▌  | 22/29 [00:02<00:00,  9.63it/s]  
Processing KLF15--AC063919.1:  79%|███████▉  | 23/29 [00:02<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  79%|███████▉  | 23/29 [00:02<00:00,  9.63it/s]     
Processing KLRC4--KLRK1:  83%|████████▎ | 24/29 [00:02<00:00,  9.63it/s]
Processing FTO--MIR663AHG:  83%|████████▎ | 24/29 [00:02<00:00,  9.63it/s]
Processing FTO--MIR663AHG:  86%|████████▌ | 25/29 [00:02<00:00,  9.64it/s]
Processing FTO--FRG1CP:  86%|████████▌ | 25/29 [00:02<00:00,  9.64it/s]   
Processing FTO--FRG1CP:  90%|████████▉ | 26/29 [00:02<00:00,  9.63it/s]
Processing FRMD6--LINC00964:  90%|████████▉ | 26/29 [00:02<00:00,  9.63it/s]
Processing FRMD6--LINC00964:  93%|█████████▎| 27/29 [00:02<00:00,  9.63it/s]
Processing IGF1R--FAM169B:  93%|█████████▎| 27/29 [00:02<00:00,  9.63it/s]  
Processing IGF1R--FAM169B:  97%|█████████▋| 28/29 [00:02<00:00,  9.63it/s]
Processing IGF1R--IRAIN:  97%|█████████▋| 28/29 [00:02<00:00,  9.63it/s]  
Processing IGF1R--IRAIN: 100%|██████████| 29/29 [00:03<00:00,  9.63it/s]
Processing IGF1R--IRAIN: 100%|██████████| 29/29 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory