File Info
- Filename
- aih-tih-sc-a8a787-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/05d1bba6bd2966cdbc714f1b9f725c/aih-tih-sc-a8a787-R1_A23YTGFLT4_1.fusions.csv
- Size
- 6.8 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a8a787-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TATDN1--NSMCE2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:124539025#chr8:125357219,reading-frame: in-frame,type: inversion,split_reads1: 12,split_reads2: 300,discordant_mates: 0,coverage1: 2946,coverage2: 6010,confidence: high | position: chr8:124539025:-#chr8:125357219:+,junction_reads: 1001,spanning_reads: 0,ffmp: 3.3742 | |
| FRMD6--ABHD12B | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr14:51715499#chr14:50901829,reading-frame: out-of-frame,type: duplication,split_reads1: 300,split_reads2: 300,discordant_mates: 59,coverage1: 5465,coverage2: 1069,confidence: high | position: chr14:51715499:+#chr14:50901829:+,junction_reads: 870,spanning_reads: 60,ffmp: 3.1348 |
| MAP4K5--NSMCE2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr14:50462665#chr8:125102051,reading-frame: out-of-frame,type: translocation,split_reads1: 170,split_reads2: 127,discordant_mates: 19,coverage1: 2285,coverage2: 1637,confidence: high | position: chr14:50462665:-#chr8:125102051:+,junction_reads: 308,spanning_reads: 20,ffmp: 1.0782 | |
| SAA2--MT-RNR2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:18245246:-#chrM:2449:+,junction_reads: 32,spanning_reads: 0,ffmp: 0.1079 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0422 | ||
| NDUFA9--AC092745.5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:4682300:+#chr12:8278055:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0472 | ||
| HSD17B4--MT-RNR2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:119473966:+#chrM:2449:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0404 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0083 | ||
| ACTBP6--ACTB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:84948968:+#chr7:5528696:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | ||
| CLIC2--BX571846.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chrX:155334371#chrX:155468286,reading-frame: out-of-frame,type: inversion,split_reads1: 6,split_reads2: 2,discordant_mates: 2,coverage1: 458,coverage2: 6,confidence: high | position: chrX:155334371:-#chrX:155468286:+,junction_reads: 9,spanning_reads: 4,ffmp: 0.0426 | |
| ATAD2--AL365295.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:123325893#chr14:53916912,reading-frame: out-of-frame,type: translocation,split_reads1: 192,split_reads2: 20,discordant_mates: 8,coverage1: 2315,coverage2: 64,confidence: high | ||
| ATAD2--AL138479.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:123325893#chr14:53916912,reading-frame: out-of-frame,type: translocation,split_reads1: 192,split_reads2: 20,discordant_mates: 8,coverage1: 2315,coverage2: 64,confidence: high | ||
| ATAD2--MIR5580 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:123325893#chr14:53926532,reading-frame: out-of-frame,type: translocation,split_reads1: 155,split_reads2: 46,discordant_mates: 8,coverage1: 2315,coverage2: 63,confidence: high | ||
| DNM2--ADGRE4P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:10830378#chr19:6994990,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 121,split_reads2: 35,discordant_mates: 1,coverage1: 7105,coverage2: 42,confidence: high | ||
| NDUFA9--AC024255.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:4682300#chr12:29072391,reading-frame: out-of-frame,type: inversion,split_reads1: 73,split_reads2: 18,discordant_mates: 3,coverage1: 5271,coverage2: 23,confidence: high | ||
| NDUFA9--AC012150.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:4682300#chr12:29072391,reading-frame: out-of-frame,type: inversion,split_reads1: 73,split_reads2: 18,discordant_mates: 3,coverage1: 5271,coverage2: 23,confidence: high | ||
| PYGL--FRMD6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:50908271#chr14:51719139,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 86,split_reads2: 3,discordant_mates: 4,coverage1: 9523,coverage2: 4,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 29,split_reads2: 42,discordant_mates: 5,coverage1: 548,coverage2: 234,confidence: high | |
| CNST--SMYD3 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr1:246591941#chr1:246504049,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 45,split_reads2: 4,discordant_mates: 1,coverage1: 1326,coverage2: 8,confidence: high | |
| FTO--FRG1GP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:53934109#chr22:15155032,reading-frame: out-of-frame,type: translocation,split_reads1: 32,split_reads2: 10,discordant_mates: 3,coverage1: 3022,coverage2: 31,confidence: high | ||
| FTO--U6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:53934109#chr22:15155032,reading-frame: out-of-frame,type: translocation,split_reads1: 32,split_reads2: 10,discordant_mates: 3,coverage1: 3022,coverage2: 31,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 17,split_reads2: 18,discordant_mates: 6,coverage1: 422,coverage2: 181,confidence: high | ||
| KLF15--AC063919.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:126351841#chr3:126294477,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 33,split_reads2: 4,discordant_mates: 1,coverage1: 538,coverage2: 52,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 12,split_reads2: 12,discordant_mates: 0,coverage1: 140,coverage2: 287,confidence: high | ||
| FTO--MIR663AHG | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:53934109#chr20:26631552,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 5,discordant_mates: 0,coverage1: 3022,coverage2: 7,confidence: high | ||
| FTO--FRG1CP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:53934109#chr20:26631552,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 5,discordant_mates: 0,coverage1: 3022,coverage2: 7,confidence: high | ||
| FRMD6--LINC00964 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:51651996#chr8:124941463,reading-frame: .,type: translocation,split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 1007,coverage2: 19,confidence: high | ||
| IGF1R--FAM169B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:98708107#chr15:98611587,reading-frame: out-of-frame,type: duplication,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 1422,coverage2: 9,confidence: high | ||
| IGF1R--IRAIN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:98708107#chr15:98611587,reading-frame: out-of-frame,type: duplication,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 1422,coverage2: 9,confidence: high |
30 rows