Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/617841f0e84ca9063aea23b54446d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/39477d52a2eed0d9bae00888a91138/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/617841f0e84ca9063aea23b54446d2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/6886a2a72352f5efe0ff4e29278a8a/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (14265007) splicing reads. 260302 splicing junctions. 185976 known splicing junctions. 74326 novel splicing junctions.
sampling 10% (28530015) splicing reads. 316409 splicing junctions. 199038 known splicing junctions. 117371 novel splicing junctions.
sampling 15% (42795022) splicing reads. 354686 splicing junctions. 205620 known splicing junctions. 149066 novel splicing junctions.
sampling 20% (57060030) splicing reads. 384442 splicing junctions. 210044 known splicing junctions. 174398 novel splicing junctions.
sampling 25% (71325037) splicing reads. 408372 splicing junctions. 213260 known splicing junctions. 195112 novel splicing junctions.
sampling 30% (85590045) splicing reads. 428282 splicing junctions. 215646 known splicing junctions. 212636 novel splicing junctions.
sampling 35% (99855052) splicing reads. 444931 splicing junctions. 217548 known splicing junctions. 227383 novel splicing junctions.
sampling 40% (114120060) splicing reads. 459253 splicing junctions. 219119 known splicing junctions. 240134 novel splicing junctions.
sampling 45% (128385067) splicing reads. 471421 splicing junctions. 220426 known splicing junctions. 250995 novel splicing junctions.
sampling 50% (142650075) splicing reads. 482027 splicing junctions. 221449 known splicing junctions. 260578 novel splicing junctions.
sampling 55% (156915083) splicing reads. 491246 splicing junctions. 222340 known splicing junctions. 268906 novel splicing junctions.
sampling 60% (171180090) splicing reads. 499403 splicing junctions. 223097 known splicing junctions. 276306 novel splicing junctions.
sampling 65% (185445098) splicing reads. 506362 splicing junctions. 223738 known splicing junctions. 282624 novel splicing junctions.
sampling 70% (199710105) splicing reads. 512415 splicing junctions. 224294 known splicing junctions. 288121 novel splicing junctions.
sampling 75% (213975113) splicing reads. 517596 splicing junctions. 224765 known splicing junctions. 292831 novel splicing junctions.
sampling 80% (228240120) splicing reads. 522083 splicing junctions. 225156 known splicing junctions. 296927 novel splicing junctions.
sampling 85% (242505128) splicing reads. 525905 splicing junctions. 225470 known splicing junctions. 300435 novel splicing junctions.
sampling 90% (256770135) splicing reads. 529005 splicing junctions. 225732 known splicing junctions. 303273 novel splicing junctions.
sampling 95% (271035143) splicing reads. 531433 splicing junctions. 225956 known splicing junctions. 305477 novel splicing junctions.
sampling 100% (285300151) splicing reads. 533326 splicing junctions. 226132 known splicing junctions. 307194 novel splicing junctions.
null device 
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