File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/42901504db650653de6f190c704277/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-242a7d-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/d69e06f9b7f3fa86968b562dad7617/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/42901504db650653de6f190c704277/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/42901504db650653de6f190c704277/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/ceacd51a4775424c12f4d0ad6dca0d/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
DIS3L2--PTMA
starfusion
GTF2IRD1--NCF1
starfusion
EIF2AK1--HDAC9
starfusion
arriba
EIF2AK1--DGKB
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
MLLT1--RANBP3
starfusion
STX16--NPEPL1
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing DIS3L2--PTMA:   0%|          | 0/8 [00:00<?, ?it/s]
Processing DIS3L2--PTMA:  12%|█▎        | 1/8 [00:00<00:00,  9.25it/s]
Processing GTF2IRD1--NCF1:  12%|█▎        | 1/8 [00:00<00:00,  9.25it/s]
Processing GTF2IRD1--NCF1:  25%|██▌       | 2/8 [00:00<00:00,  9.48it/s]
Processing EIF2AK1--HDAC9:  25%|██▌       | 2/8 [00:00<00:00,  9.48it/s]
Processing EIF2AK1--HDAC9:  38%|███▊      | 3/8 [00:00<00:00,  9.55it/s]
Processing EIF2AK1--DGKB:  38%|███▊      | 3/8 [00:00<00:00,  9.55it/s] 
Processing EIF2AK1--DGKB:  50%|█████     | 4/8 [00:00<00:00,  9.58it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 4/8 [00:00<00:00,  9.58it/s]
Processing TLK2P1--AC110079.1:  62%|██████▎   | 5/8 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  62%|██████▎   | 5/8 [00:00<00:00,  9.61it/s]  
Processing TLK2--AC240565.1:  75%|███████▌  | 6/8 [00:00<00:00,  9.62it/s]
Processing MLLT1--RANBP3:  75%|███████▌  | 6/8 [00:00<00:00,  9.62it/s]   
Processing MLLT1--RANBP3:  88%|████████▊ | 7/8 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  88%|████████▊ | 7/8 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1: 100%|██████████| 8/8 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1: 100%|██████████| 8/8 [00:00<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory