File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3ee5f49de940e0284dc7476408cb61/.command.log
Size
8.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-fe8311-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3ee5f49de940e0284dc7476408cb61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/c4f0567bc1f8c6b8744bee27da4866/aih-tih-sc-fe8311-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3ee5f49de940e0284dc7476408cb61/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/4f3851d172b7fbf1feb5160c771e25/aih-tih-sc-fe8311-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/40 [00:00<?, ?it/s]TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
KLRC4--KLRK1
arriba
AC092807.3--DDAH1
arriba
AP001347.1--ANKRD20A11P
arriba

Processing TLK2P1--AC110079.1:   0%|          | 0/40 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   2%|▎         | 1/40 [00:00<00:04,  9.21it/s]
Processing TLK2--AC240565.1:   2%|▎         | 1/40 [00:00<00:04,  9.21it/s]  
Processing TLK2--AC240565.1:   5%|▌         | 2/40 [00:00<00:04,  9.44it/s]
Processing STX16--NPEPL1:   5%|▌         | 2/40 [00:00<00:04,  9.44it/s]   
Processing STX16--NPEPL1:   8%|▊         | 3/40 [00:00<00:03,  9.52it/s]
Processing TVP23C--CDRT4:   8%|▊         | 3/40 [00:00<00:03,  9.52it/s]
Processing TVP23C--CDRT4:  10%|█         | 4/40 [00:00<00:03,  9.56it/s]
Processing PCDHGA6--PCDHGA8:  10%|█         | 4/40 [00:00<00:03,  9.56it/s]
Processing PCDHGA6--PCDHGA8:  12%|█▎        | 5/40 [00:00<00:03,  9.58it/s]
Processing PCDHGA6--PCDHGC4:  12%|█▎        | 5/40 [00:00<00:03,  9.58it/s]
Processing PCDHGA6--PCDHGC4:  15%|█▌        | 6/40 [00:00<00:03,  9.60it/s]
Processing PCDHGA6--PCDHGA10:  15%|█▌        | 6/40 [00:00<00:03,  9.60it/s]
Processing PCDHGA6--PCDHGA10:  18%|█▊        | 7/40 [00:00<00:03,  9.60it/s]
Processing PCDHGA6--PCDHGC5:  18%|█▊        | 7/40 [00:00<00:03,  9.60it/s] 
Processing PCDHGA6--PCDHGC5:  20%|██        | 8/40 [00:00<00:03,  9.61it/s]
Processing PCDHGA6--PCDHGA11:  20%|██        | 8/40 [00:00<00:03,  9.61it/s]
Processing PCDHGA6--PCDHGA11:  22%|██▎       | 9/40 [00:00<00:03,  9.61it/s]
Processing PCDHGA6--PCDHGB6:  22%|██▎       | 9/40 [00:00<00:03,  9.61it/s] 
Processing PCDHGA6--PCDHGB6:  25%|██▌       | 10/40 [00:01<00:03,  9.61it/s]
Processing PCDHGA6--PCDHGC3:  25%|██▌       | 10/40 [00:01<00:03,  9.61it/s]
Processing PCDHGA6--PCDHGC3:  28%|██▊       | 11/40 [00:01<00:03,  9.62it/s]
Processing PCDHGA6--PCDHGA9:  28%|██▊       | 11/40 [00:01<00:03,  9.62it/s]
Processing PCDHGA6--PCDHGA9:  30%|███       | 12/40 [00:01<00:02,  9.62it/s]
Processing PCDHGA6--PCDHGB7:  30%|███       | 12/40 [00:01<00:02,  9.62it/s]
Processing PCDHGA6--PCDHGB7:  32%|███▎      | 13/40 [00:01<00:02,  9.62it/s]
Processing PCDHGA6--PCDHGA12:  32%|███▎      | 13/40 [00:01<00:02,  9.62it/s]
Processing PCDHGA6--PCDHGA12:  35%|███▌      | 14/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA8:  35%|███▌      | 14/40 [00:01<00:02,  9.62it/s] 
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 15/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  38%|███▊      | 15/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  40%|████      | 16/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  40%|████      | 16/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▎     | 17/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  42%|████▎     | 17/40 [00:01<00:02,  9.62it/s] 
Processing PCDHGB2--PCDHGC5:  45%|████▌     | 18/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  45%|████▌     | 18/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 19/40 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  48%|████▊     | 19/40 [00:01<00:02,  9.62it/s] 
Processing PCDHGB2--PCDHGB6:  50%|█████     | 20/40 [00:02<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC3:  50%|█████     | 20/40 [00:02<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC3:  52%|█████▎    | 21/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA9:  52%|█████▎    | 21/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA9:  55%|█████▌    | 22/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  55%|█████▌    | 22/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  57%|█████▊    | 23/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  57%|█████▊    | 23/40 [00:02<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  60%|██████    | 24/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA8:  60%|██████    | 24/40 [00:02<00:01,  9.62it/s] 
Processing PCDHGA5--PCDHGA8:  62%|██████▎   | 25/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGC4:  62%|██████▎   | 25/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGC4:  65%|██████▌   | 26/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA10:  65%|██████▌   | 26/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA10:  68%|██████▊   | 27/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGC5:  68%|██████▊   | 27/40 [00:02<00:01,  9.62it/s] 
Processing PCDHGA5--PCDHGC5:  70%|███████   | 28/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA11:  70%|███████   | 28/40 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA11:  72%|███████▎  | 29/40 [00:03<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGB6:  72%|███████▎  | 29/40 [00:03<00:01,  9.62it/s] 
Processing PCDHGA5--PCDHGB6:  75%|███████▌  | 30/40 [00:03<00:01,  9.61it/s]
Processing PCDHGA5--PCDHGC3:  75%|███████▌  | 30/40 [00:03<00:01,  9.61it/s]
Processing PCDHGA5--PCDHGC3:  78%|███████▊  | 31/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGA9:  78%|███████▊  | 31/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGA9:  80%|████████  | 32/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGB7:  80%|████████  | 32/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGB7:  82%|████████▎ | 33/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGA12:  82%|████████▎ | 33/40 [00:03<00:00,  9.62it/s]
Processing PCDHGA5--PCDHGA12:  85%|████████▌ | 34/40 [00:03<00:00,  9.62it/s]
Processing PCDHA10--PCDHAC1:  85%|████████▌ | 34/40 [00:03<00:00,  9.62it/s] 
Processing PCDHA10--PCDHAC1:  88%|████████▊ | 35/40 [00:03<00:00,  9.62it/s]
Processing PCDHA10--PCDHAC2:  88%|████████▊ | 35/40 [00:03<00:00,  9.62it/s]
Processing PCDHA10--PCDHAC2:  90%|█████████ | 36/40 [00:03<00:00,  9.62it/s]
Processing PCDHA10--PCDHA13:  90%|█████████ | 36/40 [00:03<00:00,  9.62it/s]
Processing PCDHA10--PCDHA13:  92%|█████████▎| 37/40 [00:03<00:00,  9.62it/s]
Processing KLRC4--KLRK1:  92%|█████████▎| 37/40 [00:03<00:00,  9.62it/s]    
Processing KLRC4--KLRK1:  95%|█████████▌| 38/40 [00:03<00:00,  9.62it/s]
Processing AC092807.3--DDAH1:  95%|█████████▌| 38/40 [00:03<00:00,  9.62it/s]
Processing AC092807.3--DDAH1:  98%|█████████▊| 39/40 [00:04<00:00,  9.62it/s]
Processing AP001347.1--ANKRD20A11P:  98%|█████████▊| 39/40 [00:04<00:00,  9.62it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 40/40 [00:04<00:00,  9.62it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 40/40 [00:04<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory