File Info
- Filename
- aih-tih-sc-fe8311-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3ee5f49de940e0284dc7476408cb61/aih-tih-sc-fe8311-R1_A23YTGFLT4_1.fusions.csv
- Size
- 9.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-fe8311-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 16,spanning_reads: 0,ffmp: 0.0428 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0127 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 43,split_reads2: 54,discordant_mates: 3,coverage1: 2031,coverage2: 535,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0405 | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 88,split_reads2: 81,discordant_mates: 3,coverage1: 1132,coverage2: 517,confidence: high | |
| PCDHGA6--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGA6--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141376507#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 34,discordant_mates: 0,coverage1: 434,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 32,discordant_mates: 0,coverage1: 288,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHGA5--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 29,discordant_mates: 0,coverage1: 312,coverage2: 11895,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 30,discordant_mates: 0,coverage1: 204,coverage2: 1081,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 30,discordant_mates: 0,coverage1: 204,coverage2: 1081,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 30,discordant_mates: 0,coverage1: 204,coverage2: 1081,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 26,split_reads2: 20,discordant_mates: 1,coverage1: 324,coverage2: 848,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 17,split_reads2: 21,discordant_mates: 0,coverage1: 69,coverage2: 345,confidence: high | ||
| AP001347.1--ANKRD20A11P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:14027597#chr21:13970110,reading-frame: .,type: inversion,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 252,coverage2: 18,confidence: high |
41 rows