File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/05194ae2fa5be7c7172f4a72a2e04f/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:55:05
                             Started mapping on |	Jun 08 10:01:35
                                    Finished on |	Jun 08 10:55:23
       Mapping speed, Million of reads per hour |	331.10

                          Number of input reads |	296887005
                      Average input read length |	230
                                    UNIQUE READS:
                   Uniquely mapped reads number |	286169012
                        Uniquely mapped reads % |	96.39%
                          Average mapped length |	229.03
                       Number of splices: Total |	307208274
            Number of splices: Annotated (sjdb) |	302773417
                       Number of splices: GT/AG |	303414458
                       Number of splices: GC/AG |	1731188
                       Number of splices: AT/AC |	194526
               Number of splices: Non-canonical |	1868102
                      Mismatch rate per base, % |	0.34%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.26
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7966490
             % of reads mapped to multiple loci |	2.68%
        Number of reads mapped to too many loci |	320238
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1987245
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	444020
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%