File Info

Filename
aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/e9d1e2f38728f81f75c3747bcf34c0/aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:37:57
                             Started mapping on |	Jun 08 07:40:41
                                    Finished on |	Jun 08 08:29:07
       Mapping speed, Million of reads per hour |	367.16

                          Number of input reads |	296375716
                      Average input read length |	236
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283511062
                        Uniquely mapped reads % |	95.66%
                          Average mapped length |	235.85
                       Number of splices: Total |	304606590
            Number of splices: Annotated (sjdb) |	300140418
                       Number of splices: GT/AG |	301986997
                       Number of splices: GC/AG |	1832900
                       Number of splices: AT/AC |	203956
               Number of splices: Non-canonical |	582737
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7923483
             % of reads mapped to multiple loci |	2.67%
        Number of reads mapped to too many loci |	218341
             % of reads mapped to too many loci |	0.07%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	480584
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2076214
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	207139
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3443975
                            % of chimeric reads |	1.16%