File Info
- Filename
- aih-tih-sc-69be7e-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/eac86bd6124128510049d58bddceeb/aih-tih-sc-69be7e-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-69be7e-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| SLBP--LETM1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr4:1703596#chr4:1849209,reading-frame: out-of-frame,type: duplication,split_reads1: 37,split_reads2: 64,discordant_mates: 0,coverage1: 1863,coverage2: 2531,confidence: high | position: chr4:1703596:-#chr4:1849209:-,junction_reads: 105,spanning_reads: 0,ffmp: 0.3545 |
| HNRNPR--TCEA3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:23306412#chr1:23419139,reading-frame: .,type: duplication,split_reads1: 32,split_reads2: 55,discordant_mates: 0,coverage1: 76,coverage2: 2570,confidence: high | position: chr1:23306412:-#chr1:23419139:-,junction_reads: 90,spanning_reads: 0,ffmp: 0.3039 | |
| ANO6--ARID2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:45216391:+#chr12:45811418:+,junction_reads: 31,spanning_reads: 0,ffmp: 0.1047 | ||
| VOPP1--TNS3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:55572271#chr7:47346356,reading-frame: out-of-frame,type: deletion,split_reads1: 10,split_reads2: 19,discordant_mates: 0,coverage1: 1717,coverage2: 1467,confidence: high | position: chr7:55572271:-#chr7:47346356:-,junction_reads: 30,spanning_reads: 0,ffmp: 0.1013 | |
| MAP4K3--CRHR2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:39436892#chr7:30667313,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 9,discordant_mates: 0,coverage1: 2830,coverage2: 68,confidence: high | position: chr2:39436892:-#chr7:30667313:-,junction_reads: 21,spanning_reads: 0,ffmp: 0.0709 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.054 | ||
| TLK2--FAM157A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 11,discordant_mates: 0,coverage1: 842,coverage2: 934,confidence: high | position: chr17:62560126:+#chr3:198180755:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.054 | |
| DHRS2--GSTM2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr14:23630235:+#chr1:109671287:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0473 | |
| WWTR1--AC079841.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:149542335:-#chr3:121396007:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| ARID1B--AFDN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:156901525:+#chr6:167915168:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| BRPF1--ATG7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:9743253#chr3:11298686,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 1065,coverage2: 700,confidence: high | position: chr3:9743253:+#chr3:11298686:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0338 | |
| SPPL2B--PSPN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:2345330:+#chr19:6375616:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0304 | ||
| FBXO25--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:435707:+#chr17:106864:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0065 | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 77,split_reads2: 77,discordant_mates: 1,coverage1: 1828,coverage2: 628,confidence: high | ||
| AC005993.1--RGS6 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr14:71908434#chr14:71964772,reading-frame: .,type: deletion/read-through,split_reads1: 20,split_reads2: 48,discordant_mates: 2,coverage1: 163,coverage2: 1105,confidence: high | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 24,discordant_mates: 0,coverage1: 644,coverage2: 249,confidence: high | |
| AP000347.1--IGLL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:23659865#chr22:23573585,reading-frame: .,type: deletion/read-through,split_reads1: 39,split_reads2: 18,discordant_mates: 0,coverage1: 362,coverage2: 242,confidence: high | ||
| CCDC169--SOHLH2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:36248606#chr13:36202093,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 4,split_reads2: 6,discordant_mates: 0,coverage1: 59,coverage2: 33,confidence: high | ||
| SLBP--NSD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:1703596#chr4:1877129,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 8,split_reads2: 2,discordant_mates: 0,coverage1: 1863,coverage2: 4,confidence: high |
20 rows