File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/710fecbc63d3f7eac44c0e462e3280/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:50:34
                             Started mapping on |	Jun 08 09:57:09
                                    Finished on |	Jun 08 10:53:46
       Mapping speed, Million of reads per hour |	281.51

                          Number of input reads |	265637886
                      Average input read length |	238
                                    UNIQUE READS:
                   Uniquely mapped reads number |	254117564
                        Uniquely mapped reads % |	95.66%
                          Average mapped length |	238.45
                       Number of splices: Total |	236257650
            Number of splices: Annotated (sjdb) |	232654107
                       Number of splices: GT/AG |	233282638
                       Number of splices: GC/AG |	1710066
                       Number of splices: AT/AC |	168915
               Number of splices: Non-canonical |	1096031
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.69
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8675597
             % of reads mapped to multiple loci |	3.27%
        Number of reads mapped to too many loci |	497416
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2037432
                 % of reads unmapped: too short |	0.77%
                Number of reads unmapped: other |	309877
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%