File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ccd1dff2bcd23b26845493ab7b4085/.command.log
Size
4.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-01eb49-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/d288d9cdb78bcd600acf26570497c4/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ccd1dff2bcd23b26845493ab7b4085/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/5310649a0b15fcadb5b9228c62b38b/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ccd1dff2bcd23b26845493ab7b4085/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ACIN1--HOMEZ
starfusion
arriba
PHF12--JMJD1C
starfusion
arriba
AC015712.1--KLK9
starfusion
TLK2P1--AC110079.1
starfusion
FANCI--ABHD2
starfusion
arriba
RABGAP1L--CACYBP
starfusion
TLK2--FAM157A
starfusion
RNASE10--CD38
starfusion
RPSAP52--HMGA2
starfusion
CPSF6--FRA10AC1
starfusion
CLTC--VMP1
starfusion
F8--IKBKG
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
GRB2--GRB2
arriba
E2F1--ZNF341
arriba
PXMP4--ZNF341
arriba
MTAP--H3P30
arriba
MTAP--KHSRPP1
arriba
KANSL1--ARL17B
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing ACIN1--HOMEZ:   0%|          | 0/20 [00:00<?, ?it/s]
Processing ACIN1--HOMEZ:   5%|▌         | 1/20 [00:00<00:02,  9.21it/s]
Processing PHF12--JMJD1C:   5%|▌         | 1/20 [00:00<00:02,  9.21it/s]
Processing PHF12--JMJD1C:  10%|█         | 2/20 [00:00<00:01,  9.45it/s]
Processing AC015712.1--KLK9:  10%|█         | 2/20 [00:00<00:01,  9.45it/s]
Processing AC015712.1--KLK9:  15%|█▌        | 3/20 [00:00<00:01,  9.53it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 3/20 [00:00<00:01,  9.53it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 4/20 [00:00<00:01,  9.57it/s]
Processing FANCI--ABHD2:  20%|██        | 4/20 [00:00<00:01,  9.57it/s]      
Processing FANCI--ABHD2:  25%|██▌       | 5/20 [00:00<00:01,  9.59it/s]
Processing RABGAP1L--CACYBP:  25%|██▌       | 5/20 [00:00<00:01,  9.59it/s]
Processing RABGAP1L--CACYBP:  30%|███       | 6/20 [00:00<00:01,  9.60it/s]
Processing TLK2--FAM157A:  30%|███       | 6/20 [00:00<00:01,  9.60it/s]   
Processing TLK2--FAM157A:  35%|███▌      | 7/20 [00:00<00:01,  9.61it/s]
Processing RNASE10--CD38:  35%|███▌      | 7/20 [00:00<00:01,  9.61it/s]
Processing RNASE10--CD38:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing RPSAP52--HMGA2:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing RPSAP52--HMGA2:  45%|████▌     | 9/20 [00:00<00:01,  9.62it/s]
Processing CPSF6--FRA10AC1:  45%|████▌     | 9/20 [00:00<00:01,  9.62it/s]
Processing CPSF6--FRA10AC1:  50%|█████     | 10/20 [00:01<00:01,  9.62it/s]
Processing CLTC--VMP1:  50%|█████     | 10/20 [00:01<00:01,  9.62it/s]     
Processing CLTC--VMP1:  55%|█████▌    | 11/20 [00:01<00:00,  9.63it/s]
Processing F8--IKBKG:  55%|█████▌    | 11/20 [00:01<00:00,  9.63it/s] 
Processing F8--IKBKG:  60%|██████    | 12/20 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  60%|██████    | 12/20 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 13/20 [00:01<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  65%|██████▌   | 13/20 [00:01<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  70%|███████   | 14/20 [00:01<00:00,  9.63it/s]
Processing GRB2--GRB2:  70%|███████   | 14/20 [00:01<00:00,  9.63it/s]         
Processing GRB2--GRB2:  75%|███████▌  | 15/20 [00:01<00:00,  9.63it/s]
Processing E2F1--ZNF341:  75%|███████▌  | 15/20 [00:01<00:00,  9.63it/s]
Processing E2F1--ZNF341:  80%|████████  | 16/20 [00:01<00:00,  9.63it/s]
Processing PXMP4--ZNF341:  80%|████████  | 16/20 [00:01<00:00,  9.63it/s]
Processing PXMP4--ZNF341:  85%|████████▌ | 17/20 [00:01<00:00,  9.63it/s]
Processing MTAP--H3P30:  85%|████████▌ | 17/20 [00:01<00:00,  9.63it/s]  
Processing MTAP--H3P30:  90%|█████████ | 18/20 [00:01<00:00,  9.63it/s]
Processing MTAP--KHSRPP1:  90%|█████████ | 18/20 [00:01<00:00,  9.63it/s]
Processing MTAP--KHSRPP1:  95%|█████████▌| 19/20 [00:01<00:00,  9.63it/s]
Processing KANSL1--ARL17B:  95%|█████████▌| 19/20 [00:01<00:00,  9.63it/s]
Processing KANSL1--ARL17B: 100%|██████████| 20/20 [00:02<00:00,  9.63it/s]
Processing KANSL1--ARL17B: 100%|██████████| 20/20 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory