File Info
- Filename
- aih-tih-sc-01eb49-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ccd1dff2bcd23b26845493ab7b4085/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-01eb49-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ACIN1--HOMEZ | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr14:23061084#chr14:23277187,reading-frame: out-of-frame,type: duplication,split_reads1: 45,split_reads2: 75,discordant_mates: 7,coverage1: 3760,coverage2: 1149,confidence: high | position: chr14:23061084:-#chr14:23277187:-,junction_reads: 126,spanning_reads: 9,ffmp: 0.4551 | |
| PHF12--JMJD1C | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:28950065#chr10:63209235,reading-frame: stop-codon,type: translocation,split_reads1: 23,split_reads2: 19,discordant_mates: 2,coverage1: 1476,coverage2: 1568,confidence: high | position: chr17:28950065:-#chr10:63209235:-,junction_reads: 42,spanning_reads: 2,ffmp: 0.1483 | |
| AC015712.1--KLK9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:100855348:+#chr19:51006723:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0742 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0468 | ||
| FANCI--ABHD2 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr15:89312972#chr15:89175812,reading-frame: out-of-frame,type: duplication,split_reads1: 9,split_reads2: 6,discordant_mates: 0,coverage1: 411,coverage2: 1503,confidence: high | position: chr15:89312972:+#chr15:89175812:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0506 |
| RABGAP1L--CACYBP | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr1:174811960:+#chr1:175004614:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0438 | |
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr3:198180755:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0137 | ||
| RNASE10--CD38 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr14:20506056:+#chr4:15816511:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | |
| RPSAP52--HMGA2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr12:65826843:-#chr12:65828001:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | |
| CPSF6--FRA10AC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:69262562:+#chr10:93700106:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | ||
| CLTC--VMP1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:59647666:+#chr17:59838295:+,junction_reads: 9,spanning_reads: 1,ffmp: 0.0321 | |
| F8--IKBKG | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:155022410:-#chrX:154556165:+,junction_reads: 8,spanning_reads: 1,ffmp: 0.0152 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 41,split_reads2: 44,discordant_mates: 3,coverage1: 502,coverage2: 322,confidence: high | |
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 36,split_reads2: 28,discordant_mates: 5,coverage1: 928,coverage2: 448,confidence: high | ||
| GRB2--GRB2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:75321659#chr17:75332797,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 45,split_reads2: 22,discordant_mates: 1,coverage1: 2893,coverage2: 2768,confidence: high | |
| E2F1--ZNF341 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:33701434#chr20:33740902,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 47,discordant_mates: 4,coverage1: 111,coverage2: 551,confidence: high | ||
| PXMP4--ZNF341 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:33701434#chr20:33740902,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 47,discordant_mates: 4,coverage1: 111,coverage2: 551,confidence: high | ||
| MTAP--H3P30 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:21859425#chr9:21672113,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 5,discordant_mates: 1,coverage1: 2111,coverage2: 6,confidence: high | ||
| MTAP--KHSRPP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:21859425#chr9:21672113,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 5,discordant_mates: 1,coverage1: 2111,coverage2: 6,confidence: high | ||
| KANSL1--ARL17B | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:46094560#chr17:46339774,reading-frame: out-of-frame,type: duplication,split_reads1: 1,split_reads2: 1,discordant_mates: 15,coverage1: 2632,coverage2: 2324,confidence: high |
21 rows