output/Logs/Info.log - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260529_LH00995_0048_A23YTGFLT4;L002)

File Info

Filename: output/Logs/Info.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/530308e3127d9a29ac86429176b97b/output/Logs/Info.log
Size: 4.2 KB
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260529_LH00995_0048_A23YTGFLT4;L002)
Attempt
Content

2026-06-08T06:20:03Z thread 422 Sample sheet being processed by common lib? Yes
2026-06-08T06:20:03Z thread 422 SampleSheet Settings: 
2026-06-08T06:20:03Z thread 422   FastqCompressionFormat = gzip
2026-06-08T06:20:03Z thread 422   NoLaneSplitting = FALSE
2026-06-08T06:20:03Z thread 422   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:20:03Z thread 422   SoftwareVersion = 4.3.6
2026-06-08T06:20:03Z thread 422 
2026-06-08T06:20:03Z thread 422 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:20:03Z thread 422 shared-thread-linux-native-asio output is disabled
2026-06-08T06:20:03Z thread 422 bcl-convert Version 4.4.6
2026-06-08T06:20:03Z thread 422 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:20:03Z thread 422 Command Line: --tiles s_2 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:20:03Z thread 422 Conversion Begins.
2026-06-08T06:20:03Z thread 422 Input BCL Information:
2026-06-08T06:20:03Z thread 422     Read Structure: 2026-06-08T06:20:03Z thread 422 Y1512026-06-08T06:20:03Z thread 422 ;2026-06-08T06:20:03Z thread 422 I102026-06-08T06:20:03Z thread 422 ;2026-06-08T06:20:03Z thread 422 I102026-06-08T06:20:03Z thread 422 ;2026-06-08T06:20:03Z thread 422 Y1512026-06-08T06:20:03Z thread 422 
2026-06-08T06:20:03Z thread 422     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:20:03Z thread 422     BCL file format: cbcl
2026-06-08T06:20:03Z thread 422     Positions file format: slocs
2026-06-08T06:20:03Z thread 422     Filter file format: filter
2026-06-08T06:20:03Z thread 422 Conversion Information:
2026-06-08T06:20:03Z thread 422     Tile filtering: converting 784/6272 tiles
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 1: 96
2026-06-08T06:20:03Z thread 422     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 2: 96
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 3: 96
2026-06-08T06:20:03Z thread 422     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 4: 96
2026-06-08T06:20:03Z thread 422     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 5: 96
2026-06-08T06:20:03Z thread 422     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 6: 96
2026-06-08T06:20:03Z thread 422     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 7: 96
2026-06-08T06:20:03Z thread 422     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Sample Count for Lane 8: 96
2026-06-08T06:20:03Z thread 422     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 422     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:20:03Z thread 422 # CPU hw threads available: 64
2026-06-08T06:20:03Z thread 422 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:20:03Z thread 422 SW compressors: 64
2026-06-08T06:20:03Z thread 422 SW decompressors: 32
2026-06-08T06:20:03Z thread 422 SW FASTQ compression level: 1
2026-06-08T06:59:43Z thread 422 Lane 2 Post-run Information:
2026-06-08T06:59:43Z thread 422     Total clusters: 3944247355
2026-06-08T06:59:43Z thread 422     Total Genomic Reads: 7888494710
2026-06-08T06:59:43Z thread 422     Total Genomic Input Gigabases 1191.16
2026-06-08T06:59:43Z thread 422     Minimum reads for a sample: 22638
2026-06-08T06:59:43Z thread 422     Maximum reads for a sample: 143346452
2026-06-08T06:59:43Z thread 422     Average reads per sample: 75956741.71
2026-06-08T06:59:43Z thread 422     Undetermined reads: 596647506
2026-06-08T06:59:45Z thread 422 Conversion Complete.