File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9ba6d8e1d27124e120d5efa3e0252e/.command.log
Size
5.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-538ae3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/6d033c58ea0e595766bc0537bafea9/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9ba6d8e1d27124e120d5efa3e0252e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9ba6d8e1d27124e120d5efa3e0252e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/60836c159aecdbda7d14ac22f466b8/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
MTPN--IFT80
starfusion
arriba
ADAP1--DNAAF5
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
AL669831.1--SEPTIN14
starfusion
arriba
SNU13--LLPH
starfusion
ADAP1--PCBP2
starfusion
ARHGEF1--LTBP4
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC3
arriba
CRYZL2P--SEC16B
arriba
AL669831.4--SEPTIN14
arriba
AC015911.9--SLFN12L
arriba

  0%|          | 0/23 [00:00<?, ?it/s]
Processing MTPN--IFT80:   0%|          | 0/23 [00:00<?, ?it/s]
Processing MTPN--IFT80:   4%|▍         | 1/23 [00:00<00:02,  9.25it/s]
Processing ADAP1--DNAAF5:   4%|▍         | 1/23 [00:00<00:02,  9.25it/s]
Processing ADAP1--DNAAF5:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:  13%|█▎        | 3/23 [00:00<00:02,  9.56it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 3/23 [00:00<00:02,  9.56it/s]  
Processing TLK2--AC240565.1:  17%|█▋        | 4/23 [00:00<00:01,  9.60it/s]
Processing AL669831.1--SEPTIN14:  17%|█▋        | 4/23 [00:00<00:01,  9.60it/s]
Processing AL669831.1--SEPTIN14:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]
Processing SNU13--LLPH:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]         
Processing SNU13--LLPH:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]
Processing ADAP1--PCBP2:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]
Processing ADAP1--PCBP2:  30%|███       | 7/23 [00:00<00:01,  9.64it/s]
Processing ARHGEF1--LTBP4:  30%|███       | 7/23 [00:00<00:01,  9.64it/s]
Processing ARHGEF1--LTBP4:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]
Processing STX16--NPEPL1:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s] 
Processing STX16--NPEPL1:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 10/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  43%|████▎     | 10/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA8:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  70%|██████▉   | 16/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  70%|██████▉   | 16/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s] 
Processing PCDHGB2--PCDHGC3:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s] 
Processing CRYZL2P--SEC16B:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing AL669831.4--SEPTIN14:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing AL669831.4--SEPTIN14:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s] 
Processing AC015911.9--SLFN12L: 100%|██████████| 23/23 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 23/23 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory