File Info
- Filename
- aih-tih-sc-538ae3-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9ba6d8e1d27124e120d5efa3e0252e/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.1 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-538ae3-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| MTPN--IFT80 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:135950599#chr3:160384646,reading-frame: out-of-frame,type: translocation,split_reads1: 35,split_reads2: 8,discordant_mates: 0,coverage1: 3547,coverage2: 191,confidence: high | position: chr7:135950599:-#chr3:160384646:-,junction_reads: 49,spanning_reads: 0,ffmp: 0.1651 | |
| ADAP1--DNAAF5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:919968:-#chr7:729663:+,junction_reads: 21,spanning_reads: 0,ffmp: 0.0707 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.0556 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0171 | ||
| AL669831.1--SEPTIN14 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:727712#chr7:55796092,reading-frame: .,type: translocation,split_reads1: 4,split_reads2: 8,discordant_mates: 0,coverage1: 114,coverage2: 1764,confidence: high | position: chr1:727712:-#chr7:55796092:-,junction_reads: 15,spanning_reads: 1,ffmp: 0.0539 | |
| SNU13--LLPH | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:41680244:-#chr12:66129113:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| ADAP1--PCBP2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:919968:-#chr12:53454726:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | ||
| ARHGEF1--LTBP4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:41896482:+#chr19:40610532:+,junction_reads: 8,spanning_reads: 1,ffmp: 0.0303 | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: .,type: deletion/read-through,split_reads1: 60,split_reads2: 70,discordant_mates: 3,coverage1: 2238,coverage2: 412,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 62,split_reads2: 52,discordant_mates: 2,coverage1: 871,coverage2: 422,confidence: high | |
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 41,discordant_mates: 0,coverage1: 615,coverage2: 4125,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 26,discordant_mates: 3,coverage1: 42,coverage2: 278,confidence: high | ||
| AL669831.4--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:805799#chr7:55796092,reading-frame: .,type: translocation,split_reads1: 11,split_reads2: 1,discordant_mates: 2,coverage1: 658,coverage2: 1764,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 6,discordant_mates: 0,coverage1: 169,coverage2: 82,confidence: high |
24 rows