Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-1274d4-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:26:19.482 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:26:19 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1274d4-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-1274d4-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:26:19 GMT 2026] Executing as ?@nf-f63d35294eddb9d8263a6f683c7ee9dd-87245-d77rf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:26:19 MarkDuplicates Start of doWork freeMemory: 105829296; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:26:19 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:26:19 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,788
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 1995 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:26:27 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:5,961,895
INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 3764 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:26:29 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:9,755,092
INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 5718 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:12,319,525
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 7097 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,633,133
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 8383 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,683,191
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 9967 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:26:39 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,872,301
INFO 2026-06-08 08:26:39 MarkDuplicates Tracking 12044 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 08:26:41 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:22,661,318
INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 13699 as yet unmatched pairs. 470 records in RAM.
INFO 2026-06-08 08:26:44 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 3s. Last read position: chr1:26,280,158
INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 15303 as yet unmatched pairs. 686 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:27,882,915
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 16367 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:32,014,319
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 18019 as yet unmatched pairs. 264 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,701
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 19604 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:39,285,163
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 21201 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:40,069,833
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 22799 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:43,620,124
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 24140 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:47,281,073
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 25588 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:27:03 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:55,081,356
INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 27229 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:70,305,896
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 28655 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:89,056,118
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 30494 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:94,903,473
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 31642 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:27:13 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:109,252,824
INFO 2026-06-08 08:27:13 MarkDuplicates Tracking 32854 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:112,667,092
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 34668 as yet unmatched pairs. 713 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:116,392,965
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 35460 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:27:19 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:119,953,569
INFO 2026-06-08 08:27:19 MarkDuplicates Tracking 38097 as yet unmatched pairs. 1315 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:143,419,625
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 37755 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:146,133,686
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 38693 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:148,555,080
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 39206 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,486,134
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 39866 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 08:27:27 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,333,108
INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 40851 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:151,266,332
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 42354 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:153,932,664
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 43778 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:154,183,000
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 45764 as yet unmatched pairs. 902 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:154,970,363
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 46438 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:155,668,671
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 48140 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,248,526
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 49342 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:159,052,000
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 51068 as yet unmatched pairs. 351 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:161,051,435
INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 52471 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:164,559,981
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 53833 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:171,541,689
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 55563 as yet unmatched pairs. 623 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:179,652,169
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 56342 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:185,299,731
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 57835 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:196,736,853
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 59220 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:201,946,179
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 60599 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:204,469,579
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 61880 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:207,887,074
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 63409 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:222,629,311
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 64638 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:226,071,719
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 65949 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:230,787,512
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 67826 as yet unmatched pairs. 195 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:236,142,755
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 69515 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:246,916,280
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 70909 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:9,913,129
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 72248 as yet unmatched pairs. 71010 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:20,311,551
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 73942 as yet unmatched pairs. 72670 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:26,284,139
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 75538 as yet unmatched pairs. 74235 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:28,241,321
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 76856 as yet unmatched pairs. 75523 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 117096 as yet unmatched pairs. 75411 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 450463 as yet unmatched pairs. 63486 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 682901 as yet unmatched pairs. 54881 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:37,237,775
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 728362 as yet unmatched pairs. 52620 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:43,230,984
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 726893 as yet unmatched pairs. 51121 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:47,813,789
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 725627 as yet unmatched pairs. 49832 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:55,598,869
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 724311 as yet unmatched pairs. 48492 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,815
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 722720 as yet unmatched pairs. 46862 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:71,072,640
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 721815 as yet unmatched pairs. 45930 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:74,457,463
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 719935 as yet unmatched pairs. 44027 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:85,840,185
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 718514 as yet unmatched pairs. 42585 records in RAM.
INFO 2026-06-08 08:28:42 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:88,857,302
INFO 2026-06-08 08:28:42 MarkDuplicates Tracking 718927 as yet unmatched pairs. 42979 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:96,612,816
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 716288 as yet unmatched pairs. 40325 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:99,449,381
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 715045 as yet unmatched pairs. 39047 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:108,672,930
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 714050 as yet unmatched pairs. 38035 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,150
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 713161 as yet unmatched pairs. 37138 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:112,417,258
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 712410 as yet unmatched pairs. 36373 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:127,288,679
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 711101 as yet unmatched pairs. 35047 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:131,592,015
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 710445 as yet unmatched pairs. 34367 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:151,271,683
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 708411 as yet unmatched pairs. 32291 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:161,507,388
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 707010 as yet unmatched pairs. 30850 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:174,481,754
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 705829 as yet unmatched pairs. 29620 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:178,651,959
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 704507 as yet unmatched pairs. 28285 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:188,987,088
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 704028 as yet unmatched pairs. 27779 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:189,110,378
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 702123 as yet unmatched pairs. 25859 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:196,343,690
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 700205 as yet unmatched pairs. 23919 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:201,479,971
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 699082 as yet unmatched pairs. 22761 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:210,098,091
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 697575 as yet unmatched pairs. 21242 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,953
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 703075 as yet unmatched pairs. 26718 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,359
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 702922 as yet unmatched pairs. 26537 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,167
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 699568 as yet unmatched pairs. 23176 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,747
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 696780 as yet unmatched pairs. 20376 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,791
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 693854 as yet unmatched pairs. 17431 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,299
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 700249 as yet unmatched pairs. 23820 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,185
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 693510 as yet unmatched pairs. 17077 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,343
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 694365 as yet unmatched pairs. 17916 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:218,238,835
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 686300 as yet unmatched pairs. 9823 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:222,922,720
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 684461 as yet unmatched pairs. 7931 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:230,503,099
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 683043 as yet unmatched pairs. 6494 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:234,496,268
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 681598 as yet unmatched pairs. 5023 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:237,368,607
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 681055 as yet unmatched pairs. 4464 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:238,091,510
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 678441 as yet unmatched pairs. 1832 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:241,670,747
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 676839 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr3:9,893,158
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 675322 as yet unmatched pairs. 39981 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:13,397,392
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 674024 as yet unmatched pairs. 38662 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:21,497,097
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 672436 as yet unmatched pairs. 37036 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr3:33,828,873
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 671515 as yet unmatched pairs. 36083 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,934
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 670944 as yet unmatched pairs. 35492 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:44,989,162
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 668327 as yet unmatched pairs. 32853 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:47,122,306
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 666928 as yet unmatched pairs. 31435 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:48,469,098
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 665540 as yet unmatched pairs. 30020 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,057,093
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 663814 as yet unmatched pairs. 28279 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,706,028
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 662189 as yet unmatched pairs. 26638 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:51,393,386
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 660530 as yet unmatched pairs. 24942 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:52,561,787
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 659043 as yet unmatched pairs. 23438 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:58,078,787
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 658112 as yet unmatched pairs. 22488 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:68,636,592
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 656170 as yet unmatched pairs. 20533 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:99,850,463
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 655086 as yet unmatched pairs. 19421 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:111,913,376
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 653938 as yet unmatched pairs. 18255 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:119,587,567
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 652471 as yet unmatched pairs. 16768 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:122,700,217
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 652187 as yet unmatched pairs. 16468 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:126,727,110
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 649733 as yet unmatched pairs. 13983 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:129,556,405
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 648240 as yet unmatched pairs. 12472 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:136,195,021
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 646685 as yet unmatched pairs. 10895 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:146,517,066
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 645787 as yet unmatched pairs. 9954 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:148,857,466
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 648408 as yet unmatched pairs. 12564 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:156,554,970
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 642739 as yet unmatched pairs. 6865 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:172,247,753
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 641510 as yet unmatched pairs. 5601 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,166,615
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 640659 as yet unmatched pairs. 4703 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:187,043,066
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 638635 as yet unmatched pairs. 2659 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:195,866,975
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 637798 as yet unmatched pairs. 1806 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:792,440
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 635848 as yet unmatched pairs. 19755 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:2,716,022
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 634196 as yet unmatched pairs. 18081 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:7,816,049
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 633230 as yet unmatched pairs. 17090 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:25,234,228
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 631025 as yet unmatched pairs. 14854 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:41,100,721
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 629904 as yet unmatched pairs. 13689 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:56,486,360
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 628390 as yet unmatched pairs. 12158 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:75,012,917
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 626779 as yet unmatched pairs. 10511 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:77,066,249
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 625748 as yet unmatched pairs. 9470 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:87,457,903
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 624181 as yet unmatched pairs. 7872 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:102,802,596
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 624432 as yet unmatched pairs. 8101 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:119,502,642
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 621693 as yet unmatched pairs. 5339 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,835
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 620441 as yet unmatched pairs. 4072 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:151,174,894
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 619083 as yet unmatched pairs. 2671 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,252
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 618009 as yet unmatched pairs. 1559 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:891,155
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 616228 as yet unmatched pairs. 36380 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr5:14,374,255
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 615707 as yet unmatched pairs. 35847 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:32,599,039
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 613507 as yet unmatched pairs. 33613 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:39,202,700
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 612698 as yet unmatched pairs. 32789 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr5:55,941,141
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 611273 as yet unmatched pairs. 31333 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr5:67,184,486
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 609394 as yet unmatched pairs. 29431 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:71,632,153
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 609255 as yet unmatched pairs. 29278 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:78,421,801
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 607505 as yet unmatched pairs. 27515 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,835
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 606794 as yet unmatched pairs. 26788 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:95,731,671
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 604749 as yet unmatched pairs. 24715 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:112,864,798
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 603584 as yet unmatched pairs. 23516 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:131,439,620
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 602396 as yet unmatched pairs. 22292 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:134,811,825
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 600815 as yet unmatched pairs. 20688 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:139,307,898
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 599635 as yet unmatched pairs. 19476 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:141,246,954
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 598060 as yet unmatched pairs. 17824 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,166
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 596752 as yet unmatched pairs. 16501 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:150,134,860
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 595705 as yet unmatched pairs. 15434 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,601
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 612848 as yet unmatched pairs. 32571 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,117
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 612336 as yet unmatched pairs. 32052 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,246
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 598268 as yet unmatched pairs. 17975 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:151,664,157
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 589224 as yet unmatched pairs. 8927 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:168,244,587
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 587385 as yet unmatched pairs. 7054 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:171,910,753
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 586212 as yet unmatched pairs. 5852 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,307,583
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 584832 as yet unmatched pairs. 4443 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,618,308
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 583143 as yet unmatched pairs. 2734 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,648
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 581645 as yet unmatched pairs. 1231 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:3,225,287
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 580046 as yet unmatched pairs. 35561 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:12,120,283
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 578506 as yet unmatched pairs. 34008 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:25,610,105
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 577001 as yet unmatched pairs. 32465 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:27,866,952
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 575604 as yet unmatched pairs. 31050 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,459
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 574668 as yet unmatched pairs. 30103 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,838
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 573876 as yet unmatched pairs. 29291 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:31,660,057
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 571163 as yet unmatched pairs. 26573 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:31,943,913
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 570158 as yet unmatched pairs. 25553 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,179,908
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 568820 as yet unmatched pairs. 24209 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:32,850,375
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 567738 as yet unmatched pairs. 23119 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:33,277,750
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 565762 as yet unmatched pairs. 21132 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:34,288,802
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 564188 as yet unmatched pairs. 19539 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr6:38,152,297
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 562686 as yet unmatched pairs. 18010 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:43,339,768
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 561071 as yet unmatched pairs. 16371 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:53,012,198
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 559629 as yet unmatched pairs. 14897 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:73,471,494
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 558323 as yet unmatched pairs. 13572 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:85,427,596
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 556918 as yet unmatched pairs. 12147 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:99,551,879
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 555739 as yet unmatched pairs. 10944 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:112,148,239
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 554293 as yet unmatched pairs. 9482 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:128,929,444
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 552881 as yet unmatched pairs. 8043 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:138,430,516
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 551543 as yet unmatched pairs. 6686 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:149,409,575
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 550377 as yet unmatched pairs. 5499 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:154,824,243
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 548787 as yet unmatched pairs. 3891 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:159,041,443
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 547243 as yet unmatched pairs. 2338 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:168,549,175
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 545882 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr7:1,497,228
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 544198 as yet unmatched pairs. 34650 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:5,315,983
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 542428 as yet unmatched pairs. 32857 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,496
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 544474 as yet unmatched pairs. 34898 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr7:6,600,019
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 539182 as yet unmatched pairs. 29591 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:26,185,027
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 538114 as yet unmatched pairs. 28496 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:36,894,861
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 536722 as yet unmatched pairs. 27061 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:44,110,080
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 535718 as yet unmatched pairs. 26035 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:47,424,155
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 533826 as yet unmatched pairs. 24114 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:70,764,834
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 532394 as yet unmatched pairs. 22649 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,335
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 531531 as yet unmatched pairs. 21782 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:75,421,889
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 530627 as yet unmatched pairs. 20858 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:76,978,608
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 529131 as yet unmatched pairs. 19347 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:92,022,988
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 528502 as yet unmatched pairs. 18695 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:94,407,874
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 527870 as yet unmatched pairs. 18044 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:98,890,384
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 525089 as yet unmatched pairs. 15255 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,158,222
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 523419 as yet unmatched pairs. 13582 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,144
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 521954 as yet unmatched pairs. 12106 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr7:102,659,770
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 521280 as yet unmatched pairs. 11421 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr7:108,182,907
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 519730 as yet unmatched pairs. 9839 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:127,990,969
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 519219 as yet unmatched pairs. 9287 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:134,958,227
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 517285 as yet unmatched pairs. 7342 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:139,716,726
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 515775 as yet unmatched pairs. 5830 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:143,390,573
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 514962 as yet unmatched pairs. 4983 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:150,284,803
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 513217 as yet unmatched pairs. 3225 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:151,490,958
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 511677 as yet unmatched pairs. 1674 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 2s. Last read position: chr7:158,934,207
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 510093 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr8:17,543,655
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 509093 as yet unmatched pairs. 24307 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,998
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 508301 as yet unmatched pairs. 23489 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr8:27,658,913
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 505641 as yet unmatched pairs. 20814 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:38,253,627
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 504256 as yet unmatched pairs. 19410 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:41,509,654
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 502888 as yet unmatched pairs. 18029 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr8:53,841,610
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 501351 as yet unmatched pairs. 16472 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:67,343,193
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 500075 as yet unmatched pairs. 15173 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr8:84,911,764
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 498760 as yet unmatched pairs. 13841 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:98,950,707
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 497360 as yet unmatched pairs. 12400 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:103,140,896
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 495964 as yet unmatched pairs. 10990 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:123,254,409
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 494623 as yet unmatched pairs. 9630 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:140,451,043
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 493236 as yet unmatched pairs. 8211 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,818,193
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 491440 as yet unmatched pairs. 6402 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,751
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 491300 as yet unmatched pairs. 6260 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,279
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 490789 as yet unmatched pairs. 5749 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,938,230
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 488249 as yet unmatched pairs. 3193 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,149
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 485680 as yet unmatched pairs. 610 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr9:5,769,021
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 484305 as yet unmatched pairs. 29014 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,896
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 483678 as yet unmatched pairs. 28370 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr9:34,489,384
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 481462 as yet unmatched pairs. 26147 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr9:35,714,812
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 480179 as yet unmatched pairs. 24850 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr9:68,303,290
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 478586 as yet unmatched pairs. 23223 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr9:84,745,054
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 477653 as yet unmatched pairs. 22277 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr9:93,084,536
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 476179 as yet unmatched pairs. 20778 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr9:99,129,003
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 474624 as yet unmatched pairs. 19194 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr9:111,420,067
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 473228 as yet unmatched pairs. 17771 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr9:114,423,363
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 471593 as yet unmatched pairs. 16123 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr9:121,302,010
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 471216 as yet unmatched pairs. 15721 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr9:125,239,467
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 469100 as yet unmatched pairs. 13595 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr9:128,105,782
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 466983 as yet unmatched pairs. 11468 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,299
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 465420 as yet unmatched pairs. 9882 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,348
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 463913 as yet unmatched pairs. 8355 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 61s. Last read position: chr9:132,402,558
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 462226 as yet unmatched pairs. 6654 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr9:134,774,886
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 460685 as yet unmatched pairs. 5077 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,291
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 459286 as yet unmatched pairs. 3669 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:137,113,206
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 457336 as yet unmatched pairs. 1702 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr10:836,402
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 455729 as yet unmatched pairs. 25754 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:7,284,132
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 454206 as yet unmatched pairs. 24217 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,381
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 453154 as yet unmatched pairs. 23137 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:26,500,929
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 451930 as yet unmatched pairs. 21892 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr10:32,018,536
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 451272 as yet unmatched pairs. 21211 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:37,169,701
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 449138 as yet unmatched pairs. 19062 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:45,719,860
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 447441 as yet unmatched pairs. 17358 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:49,046,983
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 446467 as yet unmatched pairs. 16377 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:63,222,408
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 445248 as yet unmatched pairs. 15132 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:72,063,133
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 443969 as yet unmatched pairs. 13836 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:74,975,411
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 442660 as yet unmatched pairs. 12516 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:84,373,684
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 441391 as yet unmatched pairs. 11228 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:89,402,402
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 440617 as yet unmatched pairs. 10441 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:95,872,871
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 438527 as yet unmatched pairs. 8345 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:100,516,842
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 437000 as yet unmatched pairs. 6813 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr10:102,572,732
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 435378 as yet unmatched pairs. 5178 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:113,876,821
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 433929 as yet unmatched pairs. 3718 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:121,564,505
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 432813 as yet unmatched pairs. 2594 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:130,169,455
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 431416 as yet unmatched pairs. 1171 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr11:319,795
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 433688 as yet unmatched pairs. 51870 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:770,994
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 427842 as yet unmatched pairs. 46016 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,685
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 426827 as yet unmatched pairs. 44993 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,359
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 426501 as yet unmatched pairs. 44666 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,355
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 425557 as yet unmatched pairs. 43718 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:3,744,608
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 423625 as yet unmatched pairs. 41776 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:7,509,910
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 421802 as yet unmatched pairs. 39937 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr11:11,621,411
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 420386 as yet unmatched pairs. 38513 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr11:20,045,251
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 418996 as yet unmatched pairs. 37108 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:43,391,547
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 417706 as yet unmatched pairs. 35792 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:47,173,426
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 416363 as yet unmatched pairs. 34436 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:57,543,181
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 414588 as yet unmatched pairs. 32650 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:59,787,120
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 413310 as yet unmatched pairs. 31364 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:61,891,189
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 411762 as yet unmatched pairs. 29802 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,921
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 411528 as yet unmatched pairs. 29556 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,958
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 411422 as yet unmatched pairs. 29446 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,648,242
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 407912 as yet unmatched pairs. 25936 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:64,226,981
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 406259 as yet unmatched pairs. 24279 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,014,211
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 404551 as yet unmatched pairs. 22565 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,465
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 402992 as yet unmatched pairs. 20947 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,890,852
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 401053 as yet unmatched pairs. 18995 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:66,707,677
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 399183 as yet unmatched pairs. 17117 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:67,501,974
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 397220 as yet unmatched pairs. 15143 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr11:70,272,398
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 395724 as yet unmatched pairs. 13638 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:72,238,164
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 394154 as yet unmatched pairs. 12054 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr11:75,204,441
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 392730 as yet unmatched pairs. 10611 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:83,166,450
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 391066 as yet unmatched pairs. 8914 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr11:96,092,588
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 389803 as yet unmatched pairs. 7632 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:108,365,405
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 388805 as yet unmatched pairs. 6618 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:118,214,857
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 386899 as yet unmatched pairs. 4690 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,018
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 385636 as yet unmatched pairs. 3420 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,659
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 385816 as yet unmatched pairs. 3592 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:130,135,605
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 383148 as yet unmatched pairs. 906 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr12:1,593,917
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 381277 as yet unmatched pairs. 41659 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:6,537,605
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 379777 as yet unmatched pairs. 40140 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:7,061,777
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 379205 as yet unmatched pairs. 39565 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr12:9,009,036
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 377046 as yet unmatched pairs. 37398 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:10,867,931
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 375586 as yet unmatched pairs. 35930 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:16,363,802
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 374544 as yet unmatched pairs. 34873 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr12:31,298,123
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 373002 as yet unmatched pairs. 33315 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr12:45,926,301
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 371823 as yet unmatched pairs. 32129 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr12:49,032,516
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 370261 as yet unmatched pairs. 30552 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:49,637,429
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 368859 as yet unmatched pairs. 29139 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:51,807,258
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 367323 as yet unmatched pairs. 27588 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:53,309,621
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 365886 as yet unmatched pairs. 26141 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:54,345,500
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 364895 as yet unmatched pairs. 25145 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,131,508
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 363808 as yet unmatched pairs. 24052 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,566
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 361998 as yet unmatched pairs. 22226 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,995
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 362580 as yet unmatched pairs. 22806 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,546
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 359454 as yet unmatched pairs. 19670 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,829,507
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 357744 as yet unmatched pairs. 17947 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:69,239,688
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 356464 as yet unmatched pairs. 16644 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:88,090,805
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 354791 as yet unmatched pairs. 14962 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr12:96,247,121
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 353537 as yet unmatched pairs. 13677 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr12:104,321,297
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 352189 as yet unmatched pairs. 12313 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr12:109,938,445
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 350860 as yet unmatched pairs. 10975 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:112,243,994
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 349353 as yet unmatched pairs. 9450 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:113,358,710
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 347856 as yet unmatched pairs. 7940 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:120,209,861
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 346129 as yet unmatched pairs. 6204 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,395
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 345460 as yet unmatched pairs. 5533 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,326,283
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 343601 as yet unmatched pairs. 3664 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:131,941,863
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 341811 as yet unmatched pairs. 1858 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:133,120,678
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 340033 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr13:25,171,081
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 338788 as yet unmatched pairs. 8982 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr13:37,569,791
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 339423 as yet unmatched pairs. 9596 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr13:44,574,886
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 336205 as yet unmatched pairs. 6370 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr13:51,382,043
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 334921 as yet unmatched pairs. 5073 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr13:81,690,599
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 333334 as yet unmatched pairs. 3472 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,175,223
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 332296 as yet unmatched pairs. 2420 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr13:113,631,676
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 330380 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr14:21,401,054
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 328954 as yet unmatched pairs. 27180 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:23,522,814
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 327248 as yet unmatched pairs. 25472 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:24,300,500
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 325706 as yet unmatched pairs. 23924 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr14:35,308,060
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 324973 as yet unmatched pairs. 23183 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,743
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 322950 as yet unmatched pairs. 21138 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:52,878,646
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 321848 as yet unmatched pairs. 20018 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:61,052,040
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 320326 as yet unmatched pairs. 18494 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:64,523,319
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 319074 as yet unmatched pairs. 17227 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:69,386,947
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 318039 as yet unmatched pairs. 16181 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:73,729,915
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 316183 as yet unmatched pairs. 14320 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:75,963,422
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 314561 as yet unmatched pairs. 12694 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:90,401,363
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 314442 as yet unmatched pairs. 12569 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr14:94,111,672
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 312297 as yet unmatched pairs. 10411 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr14:100,141,780
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 310565 as yet unmatched pairs. 8662 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr14:102,085,421
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 308791 as yet unmatched pairs. 6885 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr14:104,772,981
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 307211 as yet unmatched pairs. 5299 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,641
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 305601 as yet unmatched pairs. 3681 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,532
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 306922 as yet unmatched pairs. 4998 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,780
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 308592 as yet unmatched pairs. 6667 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,137
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 303728 as yet unmatched pairs. 1802 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:28,667,225
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 301099 as yet unmatched pairs. 25577 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr15:34,386,788
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 300234 as yet unmatched pairs. 24705 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:40,813,965
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 298685 as yet unmatched pairs. 23139 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:42,735,543
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 297254 as yet unmatched pairs. 21705 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:44,629,240
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 296174 as yet unmatched pairs. 20611 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:50,631,440
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 294680 as yet unmatched pairs. 19112 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:58,627,700
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 293443 as yet unmatched pairs. 17865 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr15:61,974,379
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 292584 as yet unmatched pairs. 17005 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:64,072,983
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 290928 as yet unmatched pairs. 15348 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr15:65,595,749
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 289179 as yet unmatched pairs. 13583 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr15:70,851,572
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 287469 as yet unmatched pairs. 11870 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr15:73,994,931
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 286886 as yet unmatched pairs. 11278 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr15:74,937,925
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 284390 as yet unmatched pairs. 8778 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:77,025,547
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 282820 as yet unmatched pairs. 7201 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,781
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 281505 as yet unmatched pairs. 5872 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,608
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 280115 as yet unmatched pairs. 4469 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr15:90,390,846
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 278741 as yet unmatched pairs. 3081 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:97,960,876
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 276912 as yet unmatched pairs. 1248 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:86,707
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 275584 as yet unmatched pairs. 38673 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:1,438,058
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 273601 as yet unmatched pairs. 36680 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,469
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 271745 as yet unmatched pairs. 34810 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,711
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 270730 as yet unmatched pairs. 33791 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:3,563,269
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 268778 as yet unmatched pairs. 31836 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:5,091,533
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 266980 as yet unmatched pairs. 30026 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:14,246,687
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 266037 as yet unmatched pairs. 29061 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,077
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 264968 as yet unmatched pairs. 27988 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:16,358,594
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 264274 as yet unmatched pairs. 27292 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,889
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 263808 as yet unmatched pairs. 26825 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr16:21,403,395
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 262670 as yet unmatched pairs. 25680 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,818
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 261772 as yet unmatched pairs. 24780 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:22,347,391
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 261369 as yet unmatched pairs. 24374 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,236
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 261111 as yet unmatched pairs. 24115 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:28,106,102
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 260075 as yet unmatched pairs. 23063 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:29,097,243
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 258471 as yet unmatched pairs. 21456 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,848
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 258820 as yet unmatched pairs. 21786 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:30,082,746
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 256695 as yet unmatched pairs. 19655 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:30,353,373
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 255874 as yet unmatched pairs. 18831 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:30,784,351
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 254301 as yet unmatched pairs. 17249 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:31,362,162
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 253140 as yet unmatched pairs. 16085 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,716
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 251330 as yet unmatched pairs. 14260 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:56,940,173
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 250129 as yet unmatched pairs. 13052 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:64,973,001
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 248346 as yet unmatched pairs. 11265 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr16:67,908,709
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 246656 as yet unmatched pairs. 9565 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:69,748,936
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 245067 as yet unmatched pairs. 7972 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,698
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 243591 as yet unmatched pairs. 6492 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,006
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 242090 as yet unmatched pairs. 4971 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:87,981,082
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 240761 as yet unmatched pairs. 3632 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:89,100,727
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 238942 as yet unmatched pairs. 1805 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr17:674,813
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 237437 as yet unmatched pairs. 82421 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:1,775,094
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 235819 as yet unmatched pairs. 80801 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:4,184,841
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 233969 as yet unmatched pairs. 78950 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:5,558,900
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 232743 as yet unmatched pairs. 77717 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:7,497,779
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 230967 as yet unmatched pairs. 75937 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr17:7,945,714
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 229484 as yet unmatched pairs. 74447 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:16,171,829
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 228069 as yet unmatched pairs. 73026 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,609
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 226696 as yet unmatched pairs. 71651 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:28,396,188
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 225187 as yet unmatched pairs. 70134 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr17:29,534,122
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 223793 as yet unmatched pairs. 68732 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:32,369,651
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 222738 as yet unmatched pairs. 67676 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:35,878,600
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 222266 as yet unmatched pairs. 67195 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:38,008,696
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 219994 as yet unmatched pairs. 64916 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:38,719,771
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 219359 as yet unmatched pairs. 64280 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:38,878,175
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 218994 as yet unmatched pairs. 63904 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:39,517,484
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 216308 as yet unmatched pairs. 61207 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,756
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 221900 as yet unmatched pairs. 66795 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,780
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 215177 as yet unmatched pairs. 60072 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,618
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 214974 as yet unmatched pairs. 59866 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,359
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 213082 as yet unmatched pairs. 57971 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:40,088,440
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 207438 as yet unmatched pairs. 52323 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,960
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 205870 as yet unmatched pairs. 50745 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:42,329,616
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 204794 as yet unmatched pairs. 49661 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,725
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 202663 as yet unmatched pairs. 47523 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr17:45,513,965
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 201078 as yet unmatched pairs. 45934 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:47,612,510
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 200180 as yet unmatched pairs. 45034 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:49,707,756
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 198729 as yet unmatched pairs. 43578 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 204043 as yet unmatched pairs. 48890 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,987
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 204098 as yet unmatched pairs. 48945 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,827
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 196732 as yet unmatched pairs. 41573 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 201949 as yet unmatched pairs. 46784 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,457
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 195052 as yet unmatched pairs. 39887 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,049
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 203611 as yet unmatched pairs. 48442 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,918
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 189480 as yet unmatched pairs. 34306 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:57,974,504
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 185330 as yet unmatched pairs. 30153 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr17:59,647,522
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 188818 as yet unmatched pairs. 33636 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,803
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 185914 as yet unmatched pairs. 30729 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,107
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 184370 as yet unmatched pairs. 29180 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:60,049,654
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 179350 as yet unmatched pairs. 24144 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:62,552,307
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 178461 as yet unmatched pairs. 23249 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:64,153,113
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 176564 as yet unmatched pairs. 21351 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:64,821,808
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 175210 as yet unmatched pairs. 19995 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:68,037,363
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 173848 as yet unmatched pairs. 18619 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:73,201,641
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 172348 as yet unmatched pairs. 17113 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr17:75,589,862
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 170605 as yet unmatched pairs. 15362 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:76,570,602
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 168801 as yet unmatched pairs. 13555 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:78,798,998
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 167205 as yet unmatched pairs. 11949 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:80,039,911
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 165467 as yet unmatched pairs. 10207 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:80,295,716
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 165005 as yet unmatched pairs. 9741 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,345,990
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 163853 as yet unmatched pairs. 8586 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:80,376,912
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 163480 as yet unmatched pairs. 8212 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,700,497
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 159309 as yet unmatched pairs. 4039 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,370
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 158128 as yet unmatched pairs. 2852 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,586,060
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 155926 as yet unmatched pairs. 646 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr18:8,706,350
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 154291 as yet unmatched pairs. 6599 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr18:23,518,893
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 152960 as yet unmatched pairs. 5261 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr18:36,171,065
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 151660 as yet unmatched pairs. 3960 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr18:55,275,709
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 150753 as yet unmatched pairs. 3052 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr18:74,263,377
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 148648 as yet unmatched pairs. 937 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr19:902,016
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 146873 as yet unmatched pairs. 54225 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr19:1,272,440
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 145831 as yet unmatched pairs. 53182 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr19:2,243,530
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 143156 as yet unmatched pairs. 50505 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr19:4,054,722
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 141187 as yet unmatched pairs. 48536 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr19:5,789,390
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 139282 as yet unmatched pairs. 46629 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr19:6,713,487
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 138506 as yet unmatched pairs. 45851 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr19:8,455,535
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 136357 as yet unmatched pairs. 43696 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr19:10,119,112
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 134620 as yet unmatched pairs. 41957 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr19:11,033,301
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 132886 as yet unmatched pairs. 40222 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr19:12,731,040
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 131388 as yet unmatched pairs. 38722 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr19:14,397,712
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 129766 as yet unmatched pairs. 37099 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr19:15,254,231
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 128435 as yet unmatched pairs. 35768 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,347
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 126425 as yet unmatched pairs. 33757 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr19:18,134,689
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 124452 as yet unmatched pairs. 31778 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr19:19,146,809
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 122512 as yet unmatched pairs. 29838 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr19:33,206,079
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 121071 as yet unmatched pairs. 28394 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr19:35,716,595
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 119169 as yet unmatched pairs. 26492 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr19:38,283,753
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 117851 as yet unmatched pairs. 25173 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,366
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 116159 as yet unmatched pairs. 23478 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr19:40,588,684
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 114604 as yet unmatched pairs. 21922 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr19:41,755,672
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 113996 as yet unmatched pairs. 21310 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr19:42,232,098
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 111435 as yet unmatched pairs. 18749 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr19:43,596,707
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 109663 as yet unmatched pairs. 16963 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr19:45,164,176
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 107917 as yet unmatched pairs. 15214 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr19:46,918,826
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 106167 as yet unmatched pairs. 13460 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr19:48,473,965
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 104617 as yet unmatched pairs. 11909 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr19:49,468,454
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 102935 as yet unmatched pairs. 10225 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,805,720
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 101087 as yet unmatched pairs. 8370 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 122s. Last read position: chr19:51,372,463
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 99182 as yet unmatched pairs. 6454 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:54,158,391
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 97734 as yet unmatched pairs. 5004 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:55,239,451
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 96310 as yet unmatched pairs. 3578 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:57,552,356
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 94415 as yet unmatched pairs. 1680 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,125
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 93366 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr20:3,166,769
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 91293 as yet unmatched pairs. 28458 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr20:13,776,010
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 89716 as yet unmatched pairs. 26880 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr20:23,826,445
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 88554 as yet unmatched pairs. 25716 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr20:32,428,346
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 86859 as yet unmatched pairs. 24016 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr20:34,757,475
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 85348 as yet unmatched pairs. 22503 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr20:35,542,095
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 83678 as yet unmatched pairs. 20833 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr20:35,714,200
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 83727 as yet unmatched pairs. 20882 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr20:37,203,913
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 80794 as yet unmatched pairs. 17948 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,343
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 78909 as yet unmatched pairs. 16062 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr20:45,416,160
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 77382 as yet unmatched pairs. 14535 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr20:47,652,417
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 76014 as yet unmatched pairs. 13167 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr20:49,238,978
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 74640 as yet unmatched pairs. 11785 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,857
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 73017 as yet unmatched pairs. 10160 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr20:56,365,137
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 71547 as yet unmatched pairs. 8688 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr20:58,981,344
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 69776 as yet unmatched pairs. 6909 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr20:62,333,590
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 68214 as yet unmatched pairs. 5342 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr20:63,287,611
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 66891 as yet unmatched pairs. 4018 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr20:63,697,023
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 64532 as yet unmatched pairs. 1659 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr21:8,207,090
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 62658 as yet unmatched pairs. 10654 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,960
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 62068 as yet unmatched pairs. 10057 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:25,982,403
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 61264 as yet unmatched pairs. 9252 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr21:33,557,162
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 59780 as yet unmatched pairs. 7768 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr21:39,348,547
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 58246 as yet unmatched pairs. 6232 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr21:44,231,380
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 56568 as yet unmatched pairs. 4543 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,028
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 55484 as yet unmatched pairs. 3458 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,176
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 54444 as yet unmatched pairs. 2412 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr22:19,385,671
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 51481 as yet unmatched pairs. 25855 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr22:21,387,553
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 49565 as yet unmatched pairs. 23937 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr22:23,800,983
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 48063 as yet unmatched pairs. 22435 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,280
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 48152 as yet unmatched pairs. 22524 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,276
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 47708 as yet unmatched pairs. 22080 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr22:31,099,863
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 43181 as yet unmatched pairs. 17553 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr22:35,419,896
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 41563 as yet unmatched pairs. 15934 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr22:36,305,974
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 40253 as yet unmatched pairs. 14623 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr22:37,303,296
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 38408 as yet unmatched pairs. 12776 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr22:38,485,908
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 37252 as yet unmatched pairs. 11620 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr22:39,521,658
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 37167 as yet unmatched pairs. 11534 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr22:41,436,597
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 33706 as yet unmatched pairs. 8071 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr22:42,693,730
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 31997 as yet unmatched pairs. 6361 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr22:46,536,519
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 30649 as yet unmatched pairs. 5011 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,046
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 28859 as yet unmatched pairs. 3218 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr22:50,547,876
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 26528 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chrX:3,321,547
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 24926 as yet unmatched pairs. 19718 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chrX:17,801,416
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 23159 as yet unmatched pairs. 17939 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chrX:40,064,516
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 21922 as yet unmatched pairs. 16699 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chrX:47,185,428
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 20390 as yet unmatched pairs. 15166 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chrX:49,033,495
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 19309 as yet unmatched pairs. 14085 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:53,559,034
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 17384 as yet unmatched pairs. 12160 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chrX:68,513,330
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 15831 as yet unmatched pairs. 10607 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chrX:72,208,417
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 14410 as yet unmatched pairs. 9186 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chrX:81,277,157
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 13944 as yet unmatched pairs. 8720 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chrX:114,702,175
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 11919 as yet unmatched pairs. 6695 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:130,028,736
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 10708 as yet unmatched pairs. 5483 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:153,506,880
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 9899 as yet unmatched pairs. 4672 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,154
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 8445 as yet unmatched pairs. 3218 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,466,622
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 6187 as yet unmatched pairs. 960 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,497
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 4949 as yet unmatched pairs. 1327 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 2113 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 559984496 records. 0 pairs never matched.
INFO 2026-06-08 08:46:32 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141504; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:46:32 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:46:36 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:46:36 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:46:45 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 08:46:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,014
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 1669
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,545
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,859
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 1762
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,086
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 1970
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,941
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 2441
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,043
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,910
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder Large duplicate set. size = 1601
INFO 2026-06-08 08:46:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,429
INFO 2026-06-08 08:46:58 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 08:46:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,250
INFO 2026-06-08 08:47:21 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:47:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,047
INFO 2026-06-08 08:47:21 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 08:47:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,228
INFO 2026-06-08 08:47:23 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 08:47:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,345
INFO 2026-06-08 08:47:38 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:47:38 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:48:36 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:48:46 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792680136; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 08:48:46 MarkDuplicates Marking 259816565 records as duplicates.
INFO 2026-06-08 08:48:46 MarkDuplicates Found 13337442 optical duplicate clusters.
INFO 2026-06-08 08:48:46 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:49:13 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:26s. Time for last 10,000,000: 26s. Last read position: chr1:27,882,915
INFO 2026-06-08 08:49:38 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 24s. Last read position: chr1:94,903,473
INFO 2026-06-08 08:50:03 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 24s. Last read position: chr1:151,266,332
INFO 2026-06-08 08:50:21 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 18s. Last read position: chr1:179,652,169
INFO 2026-06-08 08:50:38 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 16s. Last read position: chr1:246,916,280
INFO 2026-06-08 08:50:55 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 16s. Last read position: chr2:47,813,789
INFO 2026-06-08 08:51:11 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 16s. Last read position: chr2:109,836,150
INFO 2026-06-08 08:51:28 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 16s. Last read position: chr2:196,343,690
INFO 2026-06-08 08:51:44 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 15s. Last read position: chr2:215,433,343
INFO 2026-06-08 08:52:00 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 15s. Last read position: chr3:21,497,097
INFO 2026-06-08 08:52:16 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:29s. Time for last 10,000,000: 15s. Last read position: chr3:58,078,787
INFO 2026-06-08 08:52:32 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 16s. Last read position: chr3:148,857,466
INFO 2026-06-08 08:52:48 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 15s. Last read position: chr4:41,100,721
INFO 2026-06-08 08:53:04 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 16s. Last read position: chr5:891,155
INFO 2026-06-08 08:53:20 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:33s. Time for last 10,000,000: 16s. Last read position: chr5:112,864,798
INFO 2026-06-08 08:53:36 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 16s. Last read position: chr5:151,664,157
INFO 2026-06-08 08:53:53 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 16s. Last read position: chr6:30,490,459
INFO 2026-06-08 08:54:10 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 17s. Last read position: chr6:53,012,198
INFO 2026-06-08 08:54:27 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 16s. Last read position: chr6:168,549,175
INFO 2026-06-08 08:54:44 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 17s. Last read position: chr7:73,769,335
INFO 2026-06-08 08:55:01 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 16s. Last read position: chr7:127,990,969
INFO 2026-06-08 08:55:18 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr8:38,253,627
INFO 2026-06-08 08:55:34 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 15s. Last read position: chr8:143,862,751
INFO 2026-06-08 08:55:49 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 15s. Last read position: chr9:93,084,536
INFO 2026-06-08 08:56:05 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:18s. Time for last 10,000,000: 15s. Last read position: chr9:134,774,886
INFO 2026-06-08 08:56:22 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 16s. Last read position: chr10:49,046,983
INFO 2026-06-08 08:56:39 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 16s. Last read position: chr10:121,564,505
INFO 2026-06-08 08:56:55 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 15s. Last read position: chr11:20,045,251
INFO 2026-06-08 08:57:16 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 21s. Last read position: chr11:65,014,211
INFO 2026-06-08 08:57:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 21s. Last read position: chr11:108,365,405
INFO 2026-06-08 08:58:00 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 21s. Last read position: chr12:16,363,802
INFO 2026-06-08 08:58:19 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 19s. Last read position: chr12:57,099,995
INFO 2026-06-08 08:58:36 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 16s. Last read position: chr12:120,209,861
INFO 2026-06-08 08:58:53 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 17s. Last read position: chr13:110,175,223
INFO 2026-06-08 08:59:10 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 16s. Last read position: chr14:69,386,947
INFO 2026-06-08 08:59:26 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 16s. Last read position: chr14:105,742,780
INFO 2026-06-08 08:59:44 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 17s. Last read position: chr15:64,072,983
INFO 2026-06-08 09:00:01 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 17s. Last read position: chr16:86,707
INFO 2026-06-08 09:00:17 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 16s. Last read position: chr16:21,403,395
INFO 2026-06-08 09:00:34 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:47s. Time for last 10,000,000: 16s. Last read position: chr16:31,362,162
INFO 2026-06-08 09:00:54 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 19s. Last read position: chr17:674,813
INFO 2026-06-08 09:01:17 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:30s. Time for last 10,000,000: 22s. Last read position: chr17:32,369,651
INFO 2026-06-08 09:01:40 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 23s. Last read position: chr17:40,088,440
INFO 2026-06-08 09:02:03 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 23s. Last read position: chr17:50,193,961
INFO 2026-06-08 09:02:27 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 23s. Last read position: chr17:64,153,113
INFO 2026-06-08 09:02:50 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 22s. Last read position: chr17:80,376,912
INFO 2026-06-08 09:03:13 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 23s. Last read position: chr19:1,272,440
INFO 2026-06-08 09:03:34 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:47s. Time for last 10,000,000: 20s. Last read position: chr19:15,254,231
INFO 2026-06-08 09:03:54 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:07s. Time for last 10,000,000: 19s. Last read position: chr19:42,232,098
INFO 2026-06-08 09:04:13 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:27s. Time for last 10,000,000: 19s. Last read position: chr19:57,552,356
INFO 2026-06-08 09:04:33 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 19s. Last read position: chr20:41,165,343
INFO 2026-06-08 09:04:51 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:16:04s. Time for last 10,000,000: 18s. Last read position: chr21:8,207,090
INFO 2026-06-08 09:05:10 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 19s. Last read position: chr22:23,800,983
INFO 2026-06-08 09:05:28 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:41s. Time for last 10,000,000: 18s. Last read position: chr22:42,693,730
INFO 2026-06-08 09:05:47 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:00s. Time for last 10,000,000: 18s. Last read position: chrX:68,513,330
INFO 2026-06-08 09:06:05 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:17:18s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:06:12 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:06:12 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:06:12 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:06:13 MarkDuplicates Before output close freeMemory: 201990704; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:13 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:06:13 MarkDuplicates After output close freeMemory: 104150032; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:06:13 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.89 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory