File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/84af8c13ee90f2577528632a19e42f/.command.log
Size
6.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f834a3-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/e0a7da02ba380f28848c1816c15039/aih-tih-sc-f834a3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/ff1837957399c3a995bbae1dd8a443/aih-tih-sc-f834a3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/84af8c13ee90f2577528632a19e42f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/84af8c13ee90f2577528632a19e42f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
HSD17B12--AC005523.1
starfusion
arriba
PTEN--KRT8P38
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
KLHL2--CICP1
starfusion
FBXO25--AC240565.1
starfusion
NRXN1--NRXN1
arriba
CDC73--LINC01031
arriba
C1QTNF3--AMACR
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
EFL1--GOLGA6L11P
arriba
SOGA3--KIAA0408
arriba
INTS4P1--GTF2IP14
arriba
INTS4P1--INTS4P1
arriba
TVP23C--CDRT4
arriba
GOLGA2P2Y--GOLGA2P7
arriba
PTEN--LIPK
arriba
GTPBP3--ANO8
arriba

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Processing HSD17B12--AC005523.1:   0%|          | 0/29 [00:00<?, ?it/s]
Processing HSD17B12--AC005523.1:   3%|▎         | 1/29 [00:00<00:03,  9.07it/s]
Processing PTEN--KRT8P38:   3%|▎         | 1/29 [00:00<00:03,  9.07it/s]       
Processing PTEN--KRT8P38:   7%|▋         | 2/29 [00:00<00:02,  9.35it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 2/29 [00:00<00:02,  9.35it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 3/29 [00:00<00:02,  9.45it/s]
Processing TLK2--AC240565.1:  10%|█         | 3/29 [00:00<00:02,  9.45it/s]  
Processing TLK2--AC240565.1:  14%|█▍        | 4/29 [00:00<00:02,  9.50it/s]
Processing STX16--NPEPL1:  14%|█▍        | 4/29 [00:00<00:02,  9.50it/s]   
Processing STX16--NPEPL1:  17%|█▋        | 5/29 [00:00<00:02,  9.53it/s]
Processing UBE2Q2P1--GOLGA6L10:  17%|█▋        | 5/29 [00:00<00:02,  9.53it/s]
Processing UBE2Q2P1--GOLGA6L10:  21%|██        | 6/29 [00:00<00:02,  9.54it/s]
Processing KLHL2--CICP1:  21%|██        | 6/29 [00:00<00:02,  9.54it/s]       
Processing KLHL2--CICP1:  24%|██▍       | 7/29 [00:00<00:02,  9.56it/s]
Processing FBXO25--AC240565.1:  24%|██▍       | 7/29 [00:00<00:02,  9.56it/s]
Processing FBXO25--AC240565.1:  28%|██▊       | 8/29 [00:00<00:02,  9.56it/s]
Processing NRXN1--NRXN1:  28%|██▊       | 8/29 [00:00<00:02,  9.56it/s]      
Processing NRXN1--NRXN1:  31%|███       | 9/29 [00:00<00:02,  9.57it/s]
Processing CDC73--LINC01031:  31%|███       | 9/29 [00:00<00:02,  9.57it/s]
Processing CDC73--LINC01031:  34%|███▍      | 10/29 [00:01<00:01,  9.57it/s]
Processing C1QTNF3--AMACR:  34%|███▍      | 10/29 [00:01<00:01,  9.57it/s]  
Processing C1QTNF3--AMACR:  38%|███▊      | 11/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC5:  38%|███▊      | 11/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC5:  41%|████▏     | 12/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC3:  41%|████▏     | 12/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC3:  45%|████▍     | 13/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC4:  45%|████▍     | 13/29 [00:01<00:01,  9.57it/s]
Processing PCDHGB2--PCDHGC4:  48%|████▊     | 14/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA8:  48%|████▊     | 14/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA8:  52%|█████▏    | 15/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA10:  52%|█████▏    | 15/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA10:  55%|█████▌    | 16/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA11:  55%|█████▌    | 16/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA11:  59%|█████▊    | 17/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA12:  59%|█████▊    | 17/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 18/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGB6:  62%|██████▏   | 18/29 [00:01<00:01,  9.58it/s] 
Processing PCDHGB2--PCDHGB6:  66%|██████▌   | 19/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGB7:  66%|██████▌   | 19/29 [00:01<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGB7:  69%|██████▉   | 20/29 [00:02<00:00,  9.58it/s]
Processing PCDHGB2--PCDHGA9:  69%|██████▉   | 20/29 [00:02<00:00,  9.58it/s]
Processing PCDHGB2--PCDHGA9:  72%|███████▏  | 21/29 [00:02<00:00,  9.58it/s]
Processing EFL1--GOLGA6L11P:  72%|███████▏  | 21/29 [00:02<00:00,  9.58it/s]
Processing EFL1--GOLGA6L11P:  76%|███████▌  | 22/29 [00:02<00:00,  9.58it/s]
Processing SOGA3--KIAA0408:  76%|███████▌  | 22/29 [00:02<00:00,  9.58it/s] 
Processing SOGA3--KIAA0408:  79%|███████▉  | 23/29 [00:02<00:00,  9.58it/s]
Processing INTS4P1--GTF2IP14:  79%|███████▉  | 23/29 [00:02<00:00,  9.58it/s]
Processing INTS4P1--GTF2IP14:  83%|████████▎ | 24/29 [00:02<00:00,  9.58it/s]
Processing INTS4P1--INTS4P1:  83%|████████▎ | 24/29 [00:02<00:00,  9.58it/s] 
Processing INTS4P1--INTS4P1:  86%|████████▌ | 25/29 [00:02<00:00,  9.58it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 25/29 [00:02<00:00,  9.58it/s]   
Processing TVP23C--CDRT4:  90%|████████▉ | 26/29 [00:02<00:00,  9.57it/s]
Processing GOLGA2P2Y--GOLGA2P7:  90%|████████▉ | 26/29 [00:02<00:00,  9.57it/s]
Processing GOLGA2P2Y--GOLGA2P7:  93%|█████████▎| 27/29 [00:02<00:00,  9.56it/s]
Processing PTEN--LIPK:  93%|█████████▎| 27/29 [00:02<00:00,  9.56it/s]         
Processing PTEN--LIPK:  97%|█████████▋| 28/29 [00:02<00:00,  9.56it/s]
Processing GTPBP3--ANO8:  97%|█████████▋| 28/29 [00:02<00:00,  9.56it/s]
Processing GTPBP3--ANO8: 100%|██████████| 29/29 [00:03<00:00,  9.56it/s]
Processing GTPBP3--ANO8: 100%|██████████| 29/29 [00:03<00:00,  9.55it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory