Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/28ba1ca772b38e1df04ce676b5c7e0/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/c083c79be4a8bab9ace87ccf37a4eb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/c083c79be4a8bab9ace87ccf37a4eb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/3f1163f2f46b1ebd2aaadc106e1e08/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 296687369
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	296687369
Known Splicing Events:	293151844
Partial Novel Splicing Events:	2009487
Novel Splicing Events:	1400346
Filtered Splicing Events:	125692

Total splicing  Junctions:	552833
Known Splicing Junctions:	271468
Partial Novel Splicing Junctions:	159801
Novel Splicing Junctions:	121564

===================================================================
Create BED file ...
Create Interact file ...