File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/32570b02d51787241c4fbd2b391653/.command.log
Size
190.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/819acdb7d8d4ed88e481d8f86d1620/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusionreport.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/19dfbf32048d77a3cae82134048859/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/32570b02d51787241c4fbd2b391653/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/19dfbf32048d77a3cae82134048859/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/32570b02d51787241c4fbd2b391653/.command.run
==> STAGING COMPLETE (6 inputs)

Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusionreport.tsv --gtf /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --shrink_introns --max_intron_length 1000 
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	32087523	32087813	.	-	.	gene_id "Metazoa_SRP^ENSG00000276493.1"; transcript_id "ENST00000613387.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.119-201"; exon_number 1; exon_id "ENSE00003719315.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276493.1"; orig_coord_info "chr1,32087523,32087813,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	32269338	32269597	.	-	.	gene_id "Metazoa_SRP^ENSG00000277617.1"; transcript_id "ENST00000615681.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.165-201"; exon_number 1; exon_id "ENSE00003743753.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277617.1"; orig_coord_info "chr1,32269338,32269597,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	33029232	33029576	.	-	.	gene_id "Metazoa_SRP^ENSG00000276645.1"; transcript_id "ENST00000610352.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.124-201"; exon_number 1; exon_id "ENSE00003724192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276645.1"; orig_coord_info "chr1,33029232,33029576,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	117243212	117243508	.	-	.	gene_id "Metazoa_SRP^ENSG00000277141.1"; transcript_id "ENST00000613165.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.149-201"; exon_number 1; exon_id "ENSE00003734087.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277141.1"; orig_coord_info "chr1,117243212,117243508,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	154950210	154950492	.	-	.	gene_id "Metazoa_SRP^ENSG00000268154.2"; transcript_id "ENST00000600454.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.25-201"; exon_number 1; exon_id "ENSE00003038786.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000268154.2"; orig_coord_info "chr1,154950210,154950492,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	164703026	164703309	.	-	.	gene_id "Metazoa_SRP^ENSG00000276359.1"; transcript_id "ENST00000619303.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.115-201"; exon_number 1; exon_id "ENSE00003718765.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276359.1"; orig_coord_info "chr1,164703026,164703309,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	182576772	182577040	.	-	.	gene_id "Metazoa_SRP^ENSG00000276839.1"; transcript_id "ENST00000616324.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.135-201"; exon_number 1; exon_id "ENSE00003725558.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276839.1"; orig_coord_info "chr1,182576772,182577040,-";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	193236794	193237107	.	-	.	gene_id "Metazoa_SRP^ENSG00000276735.1"; transcript_id "ENST00000620543.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.128-201"; exon_number 1; exon_id "ENSE00003723733.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276735.1"; orig_coord_info "chr1,193236794,193237107,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	10691538	10691831	.	+	.	gene_id "Metazoa_SRP^ENSG00000277446.1"; transcript_id "ENST00000487171.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.158-201"; exon_number 1; exon_id "ENSE00001896712.3"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277446.1"; orig_coord_info "chr2,10691538,10691831,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	14530941	14531223	.	+	.	gene_id "Metazoa_SRP^ENSG00000237261.2"; transcript_id "ENST00000415635.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.9-201"; exon_number 1; exon_id "ENSE00001729512.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000237261.2"; orig_coord_info "chr2,14530941,14531223,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	42511570	42511851	.	+	.	gene_id "Metazoa_SRP^ENSG00000273913.1"; transcript_id "ENST00000611671.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.40-201"; exon_number 1; exon_id "ENSE00003725055.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273913.1"; orig_coord_info "chr2,42511570,42511851,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	46266690	46266971	.	+	.	gene_id "Metazoa_SRP^ENSG00000278764.1"; transcript_id "ENST00000622034.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.201-201"; exon_number 1; exon_id "ENSE00002581629.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278764.1"; orig_coord_info "chr2,46266690,46266971,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	47383160	47383421	.	+	.	gene_id "Metazoa_SRP^ENSG00000277396.1"; transcript_id "ENST00000622819.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.157-201"; exon_number 1; exon_id "ENSE00003747902.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277396.1"; orig_coord_info "chr2,47383160,47383421,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	63168600	63168847	.	+	.	gene_id "Metazoa_SRP^ENSG00000283636.1"; transcript_id "ENST00000636778.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.212-201"; exon_number 1; exon_id "ENSE00003793500.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000283636.1"; orig_coord_info "chr2,63168600,63168847,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	96938923	96939203	.	+	.	gene_id "Metazoa_SRP^ENSG00000274206.1"; transcript_id "ENST00000548393.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.53-201"; exon_number 1; exon_id "ENSE00003716450.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274206.1"; orig_coord_info "chr2,96938923,96939203,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	109124357	109124609	.	-	.	gene_id "Metazoa_SRP^ENSG00000277628.1"; transcript_id "ENST00000612530.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.166-201"; exon_number 1; exon_id "ENSE00003722078.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277628.1"; orig_coord_info "chr2,109124357,109124609,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	127856890	127857147	.	+	.	gene_id "Metazoa_SRP^ENSG00000273950.1"; transcript_id "ENST00000614637.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.41-201"; exon_number 1; exon_id "ENSE00003716389.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273950.1"; orig_coord_info "chr2,127856890,127857147,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	130517049	130517312	.	-	.	gene_id "Metazoa_SRP^ENSG00000274711.1"; transcript_id "ENST00000615602.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.65-201"; exon_number 1; exon_id "ENSE00003733951.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274711.1"; orig_coord_info "chr2,130517049,130517312,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	130603461	130603724	.	+	.	gene_id "Metazoa_SRP^ENSG00000277668.1"; transcript_id "ENST00000621608.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.168-201"; exon_number 1; exon_id "ENSE00003717645.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277668.1"; orig_coord_info "chr2,130603461,130603724,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	194658376	194658675	.	-	.	gene_id "Metazoa_SRP^ENSG00000276123.1"; transcript_id "ENST00000621610.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.108-201"; exon_number 1; exon_id "ENSE00003733930.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276123.1"; orig_coord_info "chr2,194658376,194658675,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	201097744	201098091	.	+	.	gene_id "Metazoa_SRP^ENSG00000273975.1"; transcript_id "ENST00000621081.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.42-201"; exon_number 1; exon_id "ENSE00003741993.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273975.1"; orig_coord_info "chr2,201097744,201098091,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	12576961	12577237	.	-	.	gene_id "Metazoa_SRP^ENSG00000274514.1"; transcript_id "ENST00000621376.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.59-201"; exon_number 1; exon_id "ENSE00003712129.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274514.1"; orig_coord_info "chr3,12576961,12577237,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	39161270	39161520	.	+	.	gene_id "Metazoa_SRP^ENSG00000214305.4"; transcript_id "ENST00000398067.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.8-201"; exon_number 1; exon_id "ENSE00001531426.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000214305.4"; orig_coord_info "chr3,39161270,39161520,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	59584169	59584445	.	+	.	gene_id "Metazoa_SRP^ENSG00000277592.1"; transcript_id "ENST00000611926.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.163-201"; exon_number 1; exon_id "ENSE00003713499.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277592.1"; orig_coord_info "chr3,59584169,59584445,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	72926955	72927237	.	-	.	gene_id "Metazoa_SRP^ENSG00000276890.1"; transcript_id "ENST00000614846.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.136-201"; exon_number 1; exon_id "ENSE00003716410.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276890.1"; orig_coord_info "chr3,72926955,72927237,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	73959642	73959927	.	-	.	gene_id "Metazoa_SRP^ENSG00000278554.1"; transcript_id "ENST00000616260.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.192-201"; exon_number 1; exon_id "ENSE00003717511.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278554.1"; orig_coord_info "chr3,73959642,73959927,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	109295239	109295498	.	+	.	gene_id "Metazoa_SRP^ENSG00000277635.1"; transcript_id "ENST00000614947.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.167-201"; exon_number 1; exon_id "ENSE00003715728.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277635.1"; orig_coord_info "chr3,109295239,109295498,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	128673681	128674021	.	-	.	gene_id "Metazoa_SRP^ENSG00000277250.1"; transcript_id "ENST00000620153.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.153-201"; exon_number 1; exon_id "ENSE00003750366.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277250.1"; orig_coord_info "chr3,128673681,128674021,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	186076306	186076591	.	-	.	gene_id "Metazoa_SRP^ENSG00000277118.1"; transcript_id "ENST00000619409.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.146-201"; exon_number 1; exon_id "ENSE00003725070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277118.1"; orig_coord_info "chr3,186076306,186076591,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	186629936	186630211	.	-	.	gene_id "Metazoa_SRP^ENSG00000275696.1"; transcript_id "ENST00000622525.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.93-201"; exon_number 1; exon_id "ENSE00003724747.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275696.1"; orig_coord_info "chr3,186629936,186630211,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	9711953	9712233	.	-	.	gene_id "Metazoa_SRP^ENSG00000203436.2"; transcript_id "ENST00000356560.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.5-201"; exon_number 1; exon_id "ENSE00001425359.3"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000203436.2"; orig_coord_info "chr4,9711953,9712233,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	56810422	56810681	.	+	.	gene_id "Metazoa_SRP^ENSG00000278226.1"; transcript_id "ENST00000615776.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.185-201"; exon_number 1; exon_id "ENSE00003752811.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278226.1"; orig_coord_info "chr4,56810422,56810681,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	139155153	139155444	.	+	.	gene_id "Metazoa_SRP^ENSG00000276396.1"; transcript_id "ENST00000615106.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.117-201"; exon_number 1; exon_id "ENSE00003750993.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276396.1"; orig_coord_info "chr4,139155153,139155444,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	7239781	7240018	.	+	.	gene_id "Metazoa_SRP^ENSG00000237611.2"; transcript_id "ENST00000422908.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.10-201"; exon_number 1; exon_id "ENSE00001422953.3"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000237611.2"; orig_coord_info "chr5,7239781,7240018,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	18958147	18958413	.	-	.	gene_id "Metazoa_SRP^ENSG00000276764.1"; transcript_id "ENST00000622625.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.130-201"; exon_number 1; exon_id "ENSE00003728774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276764.1"; orig_coord_info "chr5,18958147,18958413,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	24449351	24449615	.	-	.	gene_id "Metazoa_SRP^ENSG00000277455.1"; transcript_id "ENST00000612585.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.159-201"; exon_number 1; exon_id "ENSE00002271476.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277455.1"; orig_coord_info "chr5,24449351,24449615,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	91314716	91314997	.	-	.	gene_id "Metazoa_SRP^ENSG00000277001.1"; transcript_id "ENST00000615072.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.141-201"; exon_number 1; exon_id "ENSE00003717635.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277001.1"; orig_coord_info "chr5,91314716,91314997,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	148389748	148390029	.	+	.	gene_id "Metazoa_SRP^ENSG00000274799.1"; transcript_id "ENST00000612673.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.68-201"; exon_number 1; exon_id "ENSE00003711918.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274799.1"; orig_coord_info "chr5,148389748,148390029,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	154821943	154822258	.	+	.	gene_id "Metazoa_SRP^ENSG00000277039.1"; transcript_id "ENST00000612810.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.142-201"; exon_number 1; exon_id "ENSE00003731575.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277039.1"; orig_coord_info "chr5,154821943,154822258,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	179629151	179629410	.	+	.	gene_id "Metazoa_SRP^ENSG00000273549.1"; transcript_id "ENST00000366402.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.28-201"; exon_number 1; exon_id "ENSE00003713858.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273549.1"; orig_coord_info "chr5,179629151,179629410,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	11644067	11644343	.	+	.	gene_id "Metazoa_SRP^ENSG00000277473.1"; transcript_id "ENST00000622203.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.160-201"; exon_number 1; exon_id "ENSE00003747710.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277473.1"; orig_coord_info "chr6,11644067,11644343,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	33562880	33563130	.	-	.	gene_id "Metazoa_SRP^ENSG00000276746.1"; transcript_id "ENST00000619776.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.129-201"; exon_number 1; exon_id "ENSE00003719860.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276746.1"; orig_coord_info "chr6,33562880,33563130,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	17205652	17205928	.	+	.	gene_id "Metazoa_SRP^ENSG00000278569.1"; transcript_id "ENST00000622007.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.193-201"; exon_number 1; exon_id "ENSE00003750161.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278569.1"; orig_coord_info "chr7,17205652,17205928,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	55731100	55731403	.	+	.	gene_id "Metazoa_SRP^ENSG00000275853.1"; transcript_id "ENST00000618280.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.97-201"; exon_number 1; exon_id "ENSE00003725909.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275853.1"; orig_coord_info "chr7,55731100,55731403,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	66915063	66915334	.	-	.	gene_id "Metazoa_SRP^ENSG00000274135.1"; transcript_id "ENST00000570437.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.51-201"; exon_number 1; exon_id "ENSE00002255875.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274135.1"; orig_coord_info "chr7,66915063,66915334,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75057877	75058188	.	+	.	gene_id "Metazoa_SRP^ENSG00000277127.1"; transcript_id "ENST00000576563.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.147-201"; exon_number 1; exon_id "ENSE00002655363.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277127.1"; orig_coord_info "chr7,75057877,75058188,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	116320751	116321031	.	+	.	gene_id "Metazoa_SRP^ENSG00000213167.3"; transcript_id "ENST00000392674.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.7-201"; exon_number 1; exon_id "ENSE00002312710.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000213167.3"; orig_coord_info "chr7,116320751,116321031,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	128483907	128484158	.	-	.	gene_id "Metazoa_SRP^ENSG00000276988.1"; transcript_id "ENST00000613842.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.140-201"; exon_number 1; exon_id "ENSE00003738567.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276988.1"; orig_coord_info "chr7,128483907,128484158,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	148876018	148876286	.	+	.	gene_id "Metazoa_SRP^ENSG00000275586.1"; transcript_id "ENST00000615890.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.88-201"; exon_number 1; exon_id "ENSE00001720210.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275586.1"; orig_coord_info "chr7,148876018,148876286,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	152025194	152025472	.	-	.	gene_id "Metazoa_SRP^ENSG00000276213.1"; transcript_id "ENST00000613101.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.112-201"; exon_number 1; exon_id "ENSE00003725029.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276213.1"; orig_coord_info "chr7,152025194,152025472,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	9091240	9091508	.	+	.	gene_id "Metazoa_SRP^ENSG00000197334.2"; transcript_id "ENST00000359385.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.2-201"; exon_number 1; exon_id "ENSE00003751056.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000197334.2"; orig_coord_info "chr8,9091240,9091508,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	28915579	28915864	.	-	.	gene_id "Metazoa_SRP^ENSG00000273710.1"; transcript_id "ENST00000622685.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.32-201"; exon_number 1; exon_id "ENSE00003711847.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273710.1"; orig_coord_info "chr8,28915579,28915864,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	54130582	54130860	.	+	.	gene_id "Metazoa_SRP^ENSG00000276353.1"; transcript_id "ENST00000618435.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.114-201"; exon_number 1; exon_id "ENSE00003731663.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276353.1"; orig_coord_info "chr8,54130582,54130860,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	69851148	69851436	.	-	.	gene_id "Metazoa_SRP^ENSG00000277740.1"; transcript_id "ENST00000614579.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.171-201"; exon_number 1; exon_id "ENSE00003751650.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277740.1"; orig_coord_info "chr8,69851148,69851436,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	94655911	94656208	.	+	.	gene_id "Metazoa_SRP^ENSG00000274701.1"; transcript_id "ENST00000617144.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.63-201"; exon_number 1; exon_id "ENSE00003723393.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274701.1"; orig_coord_info "chr8,94655911,94656208,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	100897853	100898136	.	-	.	gene_id "Metazoa_SRP^ENSG00000275041.1"; transcript_id "ENST00000614973.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.74-201"; exon_number 1; exon_id "ENSE00003730963.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275041.1"; orig_coord_info "chr8,100897853,100898136,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	133668420	133668701	.	-	.	gene_id "Metazoa_SRP^ENSG00000276193.1"; transcript_id "ENST00000611670.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.110-201"; exon_number 1; exon_id "ENSE00003753796.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276193.1"; orig_coord_info "chr8,133668420,133668701,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	144683169	144683464	.	+	.	gene_id "Metazoa_SRP^ENSG00000274772.1"; transcript_id "ENST00000617099.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.67-201"; exon_number 1; exon_id "ENSE00003723234.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274772.1"; orig_coord_info "chr8,144683169,144683464,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	98115885	98116135	.	+	.	gene_id "Metazoa_SRP^ENSG00000274011.1"; transcript_id "ENST00000611137.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.46-201"; exon_number 1; exon_id "ENSE00003734244.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274011.1"; orig_coord_info "chr9,98115885,98116135,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	125417305	125417586	.	+	.	gene_id "Metazoa_SRP^ENSG00000274510.1"; transcript_id "ENST00000618720.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.58-201"; exon_number 1; exon_id "ENSE00003738857.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274510.1"; orig_coord_info "chr9,125417305,125417586,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	128745857	128746138	.	-	.	gene_id "Metazoa_SRP^ENSG00000203286.5"; transcript_id "ENST00000366116.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.3-201"; exon_number 1; exon_id "ENSE00001440923.3"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000203286.5"; orig_coord_info "chr9,128745857,128746138,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	137638128	137638408	.	-	.	gene_id "Metazoa_SRP^ENSG00000274841.1"; transcript_id "ENST00000615730.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.69-201"; exon_number 1; exon_id "ENSE00003724194.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274841.1"; orig_coord_info "chr9,137638128,137638408,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	14391875	14392196	.	+	.	gene_id "Metazoa_SRP^ENSG00000278100.1"; transcript_id "ENST00000612546.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.180-201"; exon_number 1; exon_id "ENSE00003720199.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278100.1"; orig_coord_info "chr10,14391875,14392196,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	21455236	21455515	.	-	.	gene_id "Metazoa_SRP^ENSG00000273566.1"; transcript_id "ENST00000616220.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.29-201"; exon_number 1; exon_id "ENSE00003733108.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273566.1"; orig_coord_info "chr10,21455236,21455515,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	69098496	69098794	.	+	.	gene_id "Metazoa_SRP^ENSG00000274008.1"; transcript_id "ENST00000620896.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.45-201"; exon_number 1; exon_id "ENSE00003732765.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274008.1"; orig_coord_info "chr10,69098496,69098794,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	77966173	77966440	.	+	.	gene_id "Metazoa_SRP^ENSG00000274686.1"; transcript_id "ENST00000619972.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.62-201"; exon_number 1; exon_id "ENSE00002225926.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274686.1"; orig_coord_info "chr10,77966173,77966440,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	97297290	97297557	.	+	.	gene_id "Metazoa_SRP^ENSG00000277308.1"; transcript_id "ENST00000615469.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.154-201"; exon_number 1; exon_id "ENSE00003722420.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277308.1"; orig_coord_info "chr10,97297290,97297557,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	100666695	100667009	.	-	.	gene_id "Metazoa_SRP^ENSG00000274660.1"; transcript_id "ENST00000613464.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.61-201"; exon_number 1; exon_id "ENSE00003750929.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274660.1"; orig_coord_info "chr10,100666695,100667009,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	101912998	101913279	.	-	.	gene_id "Metazoa_SRP^ENSG00000274742.1"; transcript_id "ENST00000615609.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.66-201"; exon_number 1; exon_id "ENSE00003736346.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274742.1"; orig_coord_info "chr10,101912998,101913279,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	125869295	125869576	.	+	.	gene_id "Metazoa_SRP^ENSG00000277371.1"; transcript_id "ENST00000616367.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.155-201"; exon_number 1; exon_id "ENSE00001657018.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277371.1"; orig_coord_info "chr10,125869295,125869576,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	9279532	9279816	.	-	.	gene_id "Metazoa_SRP^ENSG00000273725.1"; transcript_id "ENST00000613468.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.33-201"; exon_number 1; exon_id "ENSE00003722846.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273725.1"; orig_coord_info "chr11,9279532,9279816,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	18538885	18539189	.	+	.	gene_id "Metazoa_SRP^ENSG00000274589.1"; transcript_id "ENST00000616888.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.60-201"; exon_number 1; exon_id "ENSE00003720786.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274589.1"; orig_coord_info "chr11,18538885,18539189,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	66374138	66374435	.	-	.	gene_id "Metazoa_SRP^ENSG00000276918.1"; transcript_id "ENST00000615369.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.138-201"; exon_number 1; exon_id "ENSE00003733192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276918.1"; orig_coord_info "chr11,66374138,66374435,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	86216596	86216878	.	+	.	gene_id "Metazoa_SRP^ENSG00000276669.1"; transcript_id "ENST00000618659.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.125-201"; exon_number 1; exon_id "ENSE00003753650.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276669.1"; orig_coord_info "chr11,86216596,86216878,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	105352670	105352956	.	-	.	gene_id "Metazoa_SRP^ENSG00000278640.1"; transcript_id "ENST00000612667.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.195-201"; exon_number 1; exon_id "ENSE00003720340.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278640.1"; orig_coord_info "chr11,105352670,105352956,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	118994334	118994630	.	+	.	gene_id "Metazoa_SRP^ENSG00000280502.1"; transcript_id "ENST00000629083.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.208-201"; exon_number 1; exon_id "ENSE00003762596.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000280502.1"; orig_coord_info "chr11,118994334,118994630,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	3124777	3125063	.	+	.	gene_id "Metazoa_SRP^ENSG00000278469.1"; transcript_id "ENST00000620330.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.190-201"; exon_number 1; exon_id "ENSE00003724960.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278469.1"; orig_coord_info "chr12,3124777,3125063,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	7856169	7856471	.	+	.	gene_id "Metazoa_SRP^ENSG00000278459.1"; transcript_id "ENST00000614219.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.189-201"; exon_number 1; exon_id "ENSE00003726612.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278459.1"; orig_coord_info "chr12,7856169,7856471,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	49196784	49197062	.	+	.	gene_id "Metazoa_SRP^ENSG00000274017.1"; transcript_id "ENST00000616942.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.47-201"; exon_number 1; exon_id "ENSE00003725690.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274017.1"; orig_coord_info "chr12,49196784,49197062,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	55731264	55731531	.	-	.	gene_id "Metazoa_SRP^ENSG00000258045.2"; transcript_id "ENST00000553249.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.12-201"; exon_number 1; exon_id "ENSE00002389198.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000258045.2"; orig_coord_info "chr12,55731264,55731531,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	62393607	62393880	.	-	.	gene_id "Metazoa_SRP^ENSG00000275881.1"; transcript_id "ENST00000610878.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.98-201"; exon_number 1; exon_id "ENSE00003712715.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275881.1"; orig_coord_info "chr12,62393607,62393880,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	68575858	68576136	.	-	.	gene_id "Metazoa_SRP^ENSG00000274459.1"; transcript_id "ENST00000612077.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.56-201"; exon_number 1; exon_id "ENSE00003714552.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274459.1"; orig_coord_info "chr12,68575858,68576136,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	120018900	120019261	.	+	.	gene_id "Metazoa_SRP^ENSG00000278250.1"; transcript_id "ENST00000617234.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.186-201"; exon_number 1; exon_id "ENSE00003726734.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278250.1"; orig_coord_info "chr12,120018900,120019261,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	121897583	121897826	.	-	.	gene_id "Metazoa_SRP^ENSG00000283389.1"; transcript_id "ENST00000637921.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.210-201"; exon_number 1; exon_id "ENSE00003797995.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000283389.1"; orig_coord_info "chr12,121897583,121897826,-";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	29864372	29864629	.	-	.	gene_id "Metazoa_SRP^ENSG00000278172.1"; transcript_id "ENST00000619339.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.184-201"; exon_number 1; exon_id "ENSE00003748703.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278172.1"; orig_coord_info "chr13,29864372,29864629,-";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	30684029	30684278	.	-	.	gene_id "Metazoa_SRP^ENSG00000275788.1"; transcript_id "ENST00000612609.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.94-201"; exon_number 1; exon_id "ENSE00003716515.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275788.1"; orig_coord_info "chr13,30684029,30684278,-";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	31975167	31975448	.	+	.	gene_id "Metazoa_SRP^ENSG00000278732.1"; transcript_id "ENST00000622073.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.200-201"; exon_number 1; exon_id "ENSE00003721986.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278732.1"; orig_coord_info "chr13,31975167,31975448,+";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	34910545	34910815	.	-	.	gene_id "Metazoa_SRP^ENSG00000273886.1"; transcript_id "ENST00000614194.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.39-201"; exon_number 1; exon_id "ENSE00003733017.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273886.1"; orig_coord_info "chr13,34910545,34910815,-";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	40730981	40731253	.	+	.	gene_id "Metazoa_SRP^ENSG00000277794.1"; transcript_id "ENST00000614020.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.173-201"; exon_number 1; exon_id "ENSE00003737826.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277794.1"; orig_coord_info "chr13,40730981,40731253,+";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	45732082	45732356	.	-	.	gene_id "Metazoa_SRP^ENSG00000274357.1"; transcript_id "ENST00000618452.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.55-201"; exon_number 1; exon_id "ENSE00003715201.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274357.1"; orig_coord_info "chr13,45732082,45732356,-";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	48429269	48429554	.	+	.	gene_id "Metazoa_SRP^ENSG00000277233.1"; transcript_id "ENST00000614413.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.152-201"; exon_number 1; exon_id "ENSE00003726257.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277233.1"; orig_coord_info "chr13,48429269,48429554,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	34659564	34659878	.	-	.	gene_id "Metazoa_SRP^ENSG00000275978.1"; transcript_id "ENST00000613350.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.102-201"; exon_number 1; exon_id "ENSE00002376625.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275978.1"; orig_coord_info "chr14,34659564,34659878,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	49913493	49913760	.	-	.	gene_id "Metazoa_SRP^ENSG00000274704.1"; transcript_id "ENST00000611904.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.64-201"; exon_number 1; exon_id "ENSE00003754707.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274704.1"; orig_coord_info "chr14,49913493,49913760,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	55285227	55285558	.	+	.	gene_id "Metazoa_SRP^ENSG00000278818.1"; transcript_id "ENST00000612004.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.206-201"; exon_number 1; exon_id "ENSE00003721379.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278818.1"; orig_coord_info "chr14,55285227,55285558,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	82429872	82430156	.	+	.	gene_id "Metazoa_SRP^ENSG00000276782.1"; transcript_id "ENST00000619251.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.132-201"; exon_number 1; exon_id "ENSE00003749490.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276782.1"; orig_coord_info "chr14,82429872,82430156,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	28524151	28524440	.	-	.	gene_id "Metazoa_SRP^ENSG00000276955.1"; transcript_id "ENST00000616096.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.139-201"; exon_number 1; exon_id "ENSE00003727301.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276955.1"; orig_coord_info "chr15,28524151,28524440,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	37216617	37216898	.	+	.	gene_id "Metazoa_SRP^ENSG00000274216.1"; transcript_id "ENST00000620533.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.54-201"; exon_number 1; exon_id "ENSE00002595724.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274216.1"; orig_coord_info "chr15,37216617,37216898,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	40585454	40585751	.	-	.	gene_id "Metazoa_SRP^ENSG00000203573.4"; transcript_id "ENST00000366384.4"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.6-201"; exon_number 1; exon_id "ENSE00002278755.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000203573.4"; orig_coord_info "chr15,40585454,40585751,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	51858070	51858352	.	-	.	gene_id "Metazoa_SRP^ENSG00000277677.1"; transcript_id "ENST00000613708.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.169-201"; exon_number 1; exon_id "ENSE00002572750.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277677.1"; orig_coord_info "chr15,51858070,51858352,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	62244330	62244595	.	-	.	gene_id "Metazoa_SRP^ENSG00000276713.1"; transcript_id "ENST00000618354.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.126-201"; exon_number 1; exon_id "ENSE00003740337.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276713.1"; orig_coord_info "chr15,62244330,62244595,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	74162340	74162620	.	-	.	gene_id "Metazoa_SRP^ENSG00000278348.1"; transcript_id "ENST00000616534.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.187-201"; exon_number 1; exon_id "ENSE00003738276.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278348.1"; orig_coord_info "chr15,74162340,74162620,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	75120265	75120562	.	-	.	gene_id "Metazoa_SRP^ENSG00000203411.3"; transcript_id "ENST00000366232.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.4-201"; exon_number 1; exon_id "ENSE00001337967.3"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000203411.3"; orig_coord_info "chr15,75120265,75120562,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	76230048	76230390	.	-	.	gene_id "Metazoa_SRP^ENSG00000196274.5"; transcript_id "ENST00000360440.5"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.1-201"; exon_number 1; exon_id "ENSE00001441596.4"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000196274.5"; orig_coord_info "chr15,76230048,76230390,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	80057425	80057684	.	-	.	gene_id "Metazoa_SRP^ENSG00000275460.1"; transcript_id "ENST00000610909.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.85-201"; exon_number 1; exon_id "ENSE00003744913.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275460.1"; orig_coord_info "chr15,80057425,80057684,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	84467901	84468147	.	+	.	gene_id "Metazoa_SRP^ENSG00000278785.1"; transcript_id "ENST00000611908.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.204-201"; exon_number 1; exon_id "ENSE00003727116.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278785.1"; orig_coord_info "chr15,84467901,84468147,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	84642487	84642763	.	-	.	gene_id "Metazoa_SRP^ENSG00000277578.1"; transcript_id "ENST00000613066.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.162-201"; exon_number 1; exon_id "ENSE00003733878.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277578.1"; orig_coord_info "chr15,84642487,84642763,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	96496180	96496462	.	-	.	gene_id "Metazoa_SRP^ENSG00000274079.1"; transcript_id "ENST00000616811.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.49-201"; exon_number 1; exon_id "ENSE00003733418.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274079.1"; orig_coord_info "chr15,96496180,96496462,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	4658851	4659151	.	+	.	gene_id "Metazoa_SRP^ENSG00000278700.1"; transcript_id "ENST00000613380.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.196-201"; exon_number 1; exon_id "ENSE00003725171.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278700.1"; orig_coord_info "chr16,4658851,4659151,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	4756338	4756633	.	+	.	gene_id "Metazoa_SRP^ENSG00000276096.1"; transcript_id "ENST00000622471.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.106-201"; exon_number 1; exon_id "ENSE00003729360.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276096.1"; orig_coord_info "chr16,4756338,4756633,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	11753666	11753948	.	-	.	gene_id "Metazoa_SRP^ENSG00000274505.1"; transcript_id "ENST00000597717.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.57-201"; exon_number 1; exon_id "ENSE00003175399.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274505.1"; orig_coord_info "chr16,11753666,11753948,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	30816030	30816302	.	+	.	gene_id "Metazoa_SRP^ENSG00000274848.1"; transcript_id "ENST00000612622.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.70-201"; exon_number 1; exon_id "ENSE00003722713.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274848.1"; orig_coord_info "chr16,30816030,30816302,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	48432927	48433208	.	-	.	gene_id "Metazoa_SRP^ENSG00000275909.1"; transcript_id "ENST00000447610.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.100-201"; exon_number 1; exon_id "ENSE00001531433.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275909.1"; orig_coord_info "chr16,48432927,48433208,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	50054143	50054430	.	+	.	gene_id "Metazoa_SRP^ENSG00000273829.1"; transcript_id "ENST00000611402.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.35-201"; exon_number 1; exon_id "ENSE00003721726.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273829.1"; orig_coord_info "chr16,50054143,50054430,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	59004213	59004494	.	+	.	gene_id "Metazoa_SRP^ENSG00000275808.1"; transcript_id "ENST00000619648.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.95-201"; exon_number 1; exon_id "ENSE00003719229.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275808.1"; orig_coord_info "chr16,59004213,59004494,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	1101007	1101273	.	-	.	gene_id "Metazoa_SRP^ENSG00000278794.1"; transcript_id "ENST00000620071.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.205-201"; exon_number 1; exon_id "ENSE00003738918.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278794.1"; orig_coord_info "chr17,1101007,1101273,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	6521131	6521412	.	+	.	gene_id "Metazoa_SRP^ENSG00000274860.1"; transcript_id "ENST00000612122.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.71-201"; exon_number 1; exon_id "ENSE00003733716.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274860.1"; orig_coord_info "chr17,6521131,6521412,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	18605054	18605356	.	-	.	gene_id "Metazoa_SRP^ENSG00000276532.1"; transcript_id "ENST00000578843.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.121-201"; exon_number 1; exon_id "ENSE00002690398.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276532.1"; orig_coord_info "chr17,18605054,18605356,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	20340743	20341045	.	+	.	gene_id "Metazoa_SRP^ENSG00000278701.1"; transcript_id "ENST00000618956.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.197-201"; exon_number 1; exon_id "ENSE00002713637.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278701.1"; orig_coord_info "chr17,20340743,20341045,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	43607436	43607723	.	-	.	gene_id "Metazoa_SRP^ENSG00000278109.1"; transcript_id "ENST00000616636.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.181-201"; exon_number 1; exon_id "ENSE00003731893.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278109.1"; orig_coord_info "chr17,43607436,43607723,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	45526466	45526746	.	-	.	gene_id "Metazoa_SRP^ENSG00000278770.1"; transcript_id "ENST00000585071.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.202-201"; exon_number 1; exon_id "ENSE00002694270.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278770.1"; orig_coord_info "chr17,45526466,45526746,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	45931806	45932083	.	+	.	gene_id "Metazoa_SRP^ENSG00000274883.1"; transcript_id "ENST00000617458.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.72-201"; exon_number 1; exon_id "ENSE00003716654.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000274883.1"; orig_coord_info "chr17,45931806,45932083,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	49017793	49018061	.	-	.	gene_id "Metazoa_SRP^ENSG00000255851.2"; transcript_id "ENST00000537819.2"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.11-201"; exon_number 1; exon_id "ENSE00003689828.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000255851.2"; orig_coord_info "chr17,49017793,49018061,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	58785323	58785608	.	-	.	gene_id "Metazoa_SRP^ENSG00000276601.1"; transcript_id "ENST00000616695.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.123-201"; exon_number 1; exon_id "ENSE00003739856.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276601.1"; orig_coord_info "chr17,58785323,58785608,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	58951185	58951513	.	+	.	gene_id "Metazoa_SRP^ENSG00000275680.1"; transcript_id "ENST00000613789.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.92-201"; exon_number 1; exon_id "ENSE00003720022.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275680.1"; orig_coord_info "chr17,58951185,58951513,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	77014880	77015138	.	+	.	gene_id "Metazoa_SRP^ENSG00000276202.1"; transcript_id "ENST00000614073.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.111-201"; exon_number 1; exon_id "ENSE00003736300.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276202.1"; orig_coord_info "chr17,77014880,77015138,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	24179038	24179295	.	-	.	gene_id "Metazoa_SRP^ENSG00000273524.1"; transcript_id "ENST00000617573.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.27-201"; exon_number 1; exon_id "ENSE00003742793.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273524.1"; orig_coord_info "chr18,24179038,24179295,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	76840838	76841102	.	-	.	gene_id "Metazoa_SRP^ENSG00000275355.1"; transcript_id "ENST00000611637.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.82-201"; exon_number 1; exon_id "ENSE00003714134.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275355.1"; orig_coord_info "chr18,76840838,76841102,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	1724115	1724395	.	+	.	gene_id "Metazoa_SRP^ENSG00000275642.1"; transcript_id "ENST00000622745.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.91-201"; exon_number 1; exon_id "ENSE00003742142.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275642.1"; orig_coord_info "chr19,1724115,1724395,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	4127492	4127732	.	+	.	gene_id "Metazoa_SRP^ENSG00000278007.1"; transcript_id "ENST00000619020.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.179-201"; exon_number 1; exon_id "ENSE00003754295.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278007.1"; orig_coord_info "chr19,4127492,4127732,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	6928345	6928629	.	+	.	gene_id "Metazoa_SRP^ENSG00000276568.1"; transcript_id "ENST00000610476.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.122-201"; exon_number 1; exon_id "ENSE00003749181.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276568.1"; orig_coord_info "chr19,6928345,6928629,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	16187313	16187566	.	+	.	gene_id "Metazoa_SRP^ENSG00000275901.1"; transcript_id "ENST00000621370.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.99-201"; exon_number 1; exon_id "ENSE00003752377.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275901.1"; orig_coord_info "chr19,16187313,16187566,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	40450225	40450480	.	+	.	gene_id "Metazoa_SRP^ENSG00000277510.1"; transcript_id "ENST00000617435.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.161-201"; exon_number 1; exon_id "ENSE00003739021.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277510.1"; orig_coord_info "chr19,40450225,40450480,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	41442102	41442392	.	-	.	gene_id "Metazoa_SRP^ENSG00000277136.1"; transcript_id "ENST00000614489.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.148-201"; exon_number 1; exon_id "ENSE00001600426.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277136.1"; orig_coord_info "chr19,41442102,41442392,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	50019019	50019320	.	+	.	gene_id "Metazoa_SRP^ENSG00000276729.1"; transcript_id "ENST00000614914.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.127-201"; exon_number 1; exon_id "ENSE00003744398.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276729.1"; orig_coord_info "chr19,50019019,50019320,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	50258443	50258722	.	+	.	gene_id "Metazoa_SRP^ENSG00000276002.1"; transcript_id "ENST00000622099.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.104-201"; exon_number 1; exon_id "ENSE00001425316.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276002.1"; orig_coord_info "chr19,50258443,50258722,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	8998849	8999100	.	+	.	gene_id "Metazoa_SRP^ENSG00000275222.1"; transcript_id "ENST00000616915.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.77-201"; exon_number 1; exon_id "ENSE00003735074.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275222.1"; orig_coord_info "chr20,8998849,8999100,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	10025917	10026168	.	+	.	gene_id "Metazoa_SRP^ENSG00000276525.1"; transcript_id "ENST00000614195.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.120-201"; exon_number 1; exon_id "ENSE00003742433.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276525.1"; orig_coord_info "chr20,10025917,10026168,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	36561237	36561530	.	-	.	gene_id "Metazoa_SRP^ENSG00000273986.1"; transcript_id "ENST00000615037.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.44-201"; exon_number 1; exon_id "ENSE00003740121.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273986.1"; orig_coord_info "chr20,36561237,36561530,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	38711821	38712103	.	-	.	gene_id "Metazoa_SRP^ENSG00000277965.1"; transcript_id "ENST00000621099.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.177-201"; exon_number 1; exon_id "ENSE00003751450.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277965.1"; orig_coord_info "chr20,38711821,38712103,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	45847630	45847940	.	-	.	gene_id "Metazoa_SRP^ENSG00000277051.1"; transcript_id "ENST00000617007.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.144-201"; exon_number 1; exon_id "ENSE00003751117.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277051.1"; orig_coord_info "chr20,45847630,45847940,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	49932795	49933078	.	+	.	gene_id "Metazoa_SRP^ENSG00000269103.2"; transcript_id "ENST00000547793.3"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.26-201"; exon_number 1; exon_id "ENSE00001260772.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000269103.2"; orig_coord_info "chr20,49932795,49933078,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	18524620	18524935	.	+	.	gene_id "Metazoa_SRP^ENSG00000275319.1"; transcript_id "ENST00000618466.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.81-201"; exon_number 1; exon_id "ENSE00003733958.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275319.1"; orig_coord_info "chr22,18524620,18524935,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	18615581	18615900	.	+	.	gene_id "Metazoa_SRP^ENSG00000275362.1"; transcript_id "ENST00000611762.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.83-201"; exon_number 1; exon_id "ENSE00003725800.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275362.1"; orig_coord_info "chr22,18615581,18615900,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	20070716	20070965	.	+	.	gene_id "Metazoa_SRP^ENSG00000277950.1"; transcript_id "ENST00000619837.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.175-201"; exon_number 1; exon_id "ENSE00003735665.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277950.1"; orig_coord_info "chr22,20070716,20070965,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	21379382	21379701	.	-	.	gene_id "Metazoa_SRP^ENSG00000273846.1"; transcript_id "ENST00000617743.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.37-201"; exon_number 1; exon_id "ENSE00003717206.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273846.1"; orig_coord_info "chr22,21379382,21379701,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	21396273	21396590	.	-	.	gene_id "Metazoa_SRP^ENSG00000275840.1"; transcript_id "ENST00000621315.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.96-201"; exon_number 1; exon_id "ENSE00003715289.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275840.1"; orig_coord_info "chr22,21396273,21396590,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	21463963	21464279	.	+	.	gene_id "Metazoa_SRP^ENSG00000276800.1"; transcript_id "ENST00000612964.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.133-201"; exon_number 1; exon_id "ENSE00003712104.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276800.1"; orig_coord_info "chr22,21463963,21464279,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	21555138	21555457	.	+	.	gene_id "Metazoa_SRP^ENSG00000275293.1"; transcript_id "ENST00000619894.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.80-201"; exon_number 1; exon_id "ENSE00003747676.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275293.1"; orig_coord_info "chr22,21555138,21555457,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	23132730	23133005	.	-	.	gene_id "Metazoa_SRP^ENSG00000283438.1"; transcript_id "ENST00000635920.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.211-201"; exon_number 1; exon_id "ENSE00003798476.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000283438.1"; orig_coord_info "chr22,23132730,23133005,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	37578669	37578922	.	+	.	gene_id "Metazoa_SRP^ENSG00000273866.1"; transcript_id "ENST00000615981.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.38-201"; exon_number 1; exon_id "ENSE00003750743.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273866.1"; orig_coord_info "chr22,37578669,37578922,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	38281028	38281289	.	-	.	gene_id "Metazoa_SRP^ENSG00000277385.1"; transcript_id "ENST00000622344.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.156-201"; exon_number 1; exon_id "ENSE00003737036.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277385.1"; orig_coord_info "chr22,38281028,38281289,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	40917111	40917381	.	+	.	gene_id "Metazoa_SRP^ENSG00000273979.1"; transcript_id "ENST00000616394.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.43-201"; exon_number 1; exon_id "ENSE00003744603.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000273979.1"; orig_coord_info "chr22,40917111,40917381,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	49846456	49846720	.	+	.	gene_id "Metazoa_SRP^ENSG00000277771.1"; transcript_id "ENST00000621807.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.172-201"; exon_number 1; exon_id "ENSE00003719937.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277771.1"; orig_coord_info "chr22,49846456,49846720,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	388100	388389	.	-	.	gene_id "Metazoa_SRP^ENSG00000275287.5"; transcript_id "ENST00000610676.5"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.79-201"; exon_number 1; exon_id "ENSE00003740571.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275287.5"; orig_coord_info "chrX,388100,388389,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	46073651	46073935	.	-	.	gene_id "Metazoa_SRP^ENSG00000278838.1"; transcript_id "ENST00000612254.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.207-201"; exon_number 1; exon_id "ENSE00003730310.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278838.1"; orig_coord_info "chrX,46073651,46073935,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	46553522	46553775	.	-	.	gene_id "Metazoa_SRP^ENSG00000277721.1"; transcript_id "ENST00000616060.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.170-201"; exon_number 1; exon_id "ENSE00001463378.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277721.1"; orig_coord_info "chrX,46553522,46553775,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	47476822	47477152	.	-	.	gene_id "Metazoa_SRP^ENSG00000277605.1"; transcript_id "ENST00000620748.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.164-201"; exon_number 1; exon_id "ENSE00003752596.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277605.1"; orig_coord_info "chrX,47476822,47477152,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	48524480	48524806	.	+	.	gene_id "Metazoa_SRP^ENSG00000276823.1"; transcript_id "ENST00000610965.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.134-201"; exon_number 1; exon_id "ENSE00003751716.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000276823.1"; orig_coord_info "chrX,48524480,48524806,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	71368666	71368968	.	+	.	gene_id "Metazoa_SRP^ENSG00000275975.1"; transcript_id "ENST00000611704.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.101-201"; exon_number 1; exon_id "ENSE00003727318.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275975.1"; orig_coord_info "chrX,71368666,71368968,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	97081674	97081956	.	+	.	gene_id "Metazoa_SRP^ENSG00000277900.1"; transcript_id "ENST00000619127.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.174-201"; exon_number 1; exon_id "ENSE00003737860.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000277900.1"; orig_coord_info "chrX,97081674,97081956,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	129796491	129796783	.	-	.	gene_id "Metazoa_SRP^ENSG00000275070.1"; transcript_id "ENST00000614439.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.75-201"; exon_number 1; exon_id "ENSE00003718708.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000275070.1"; orig_coord_info "chrX,129796491,129796783,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	151275509	151275789	.	+	.	gene_id "Metazoa_SRP^ENSG00000278724.1"; transcript_id "ENST00000615501.1"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.199-201"; exon_number 1; exon_id "ENSE00002258300.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Metazoa_SRP^ENSG00000278724.1"; orig_coord_info "chrX,151275509,151275789,+";
Error, chr discrepancy in gtf info for chrY	ENSEMBL	exon	388100	388389	.	-	.	gene_id "Metazoa_SRP^ENSG00000275287.5_PAR_Y"; transcript_id "ENST00000610676.5_PAR_Y"; gene_type "misc_RNA"; gene_name "Metazoa_SRP"; transcript_type "misc_RNA"; transcript_name "Metazoa_SRP.79-201"; exon_number 1; exon_id "ENSE00003740571.1"; level 3; transcript_support_level "NA"; tag "basic"; tag "PAR"; FI_gene_label "Metazoa_SRP^ENSG00000275287.5_PAR_Y"; orig_coord_info "chrY,388100,388389,-";
Error - no gene spans 100M bases in length.... likely problem at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 589.
	main::get_gene_span_info("chr1\x{9}ENSEMBL\x{9}exon\x{9}29041199\x{9}29041480\x{9}.\x{9}+\x{9}.\x{9}gene_id \"Metazoa_SR"...) called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 417
	main::get_gene_contig_gtf("chr1\x{9}ENSEMBL\x{9}exon\x{9}29041199\x{9}29041480\x{9}.\x{9}+\x{9}.\x{9}gene_id \"Metazoa_SR"..., "/tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa") called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 212
	eval {...} called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 210

Done.
Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusionreport.tsv --gtf /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --shrink_introns --max_intron_length 1000 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf > /tmp/nxf.RoggYmtauT/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf > /tmp/nxf.RoggYmtauT/cytoBand.txt
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed
-parsing GTF file: /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star --out_dir /tmp/nxf.RoggYmtauT/fi_workdir --reads "/tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
Jun 08 10:13:06 ..... started STAR run
Jun 08 10:13:06 ..... loading genome
Jun 08 10:14:56 ... generating Suffix Array index
Jun 08 10:18:48 ... completed Suffix Array index
Jun 08 10:18:49 ..... processing annotations GTF
Jun 08 10:18:49 ..... inserting junctions into the genome indices
Jun 08 10:19:50 ..... started mapping
Jun 08 11:37:58 ..... finished mapping
Jun 08 11:37:59 ..... started sorting BAM
Jun 08 11:38:01 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
Execution Time = 84.98 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star --out_dir /tmp/nxf.RoggYmtauT/fi_workdir --reads "/tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
11:38:24 : INFO : Done.
Execution Time = 0.33 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam

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[3720000]   -done parsing /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 172,
          ' ** passed ** ' => 33111,
          'num_hits: 8 != num_counted_on_fusion_contigs 2 ' => 6,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 485,
          'num_hits: 9 != num_counted_on_fusion_contigs 3 ' => 12,
          'exons hit < 2' => 1,
          'low complexity anchor region' => 16,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 129,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 720,
          'per_id < 96' => 13059,
          'small anchor length' => 315,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 12,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 1843,
          'num_hits: 7 != num_counted_on_fusion_contigs 1 ' => 2,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 6,
          'excessive soft clipping' => 26074,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 73,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 1254,
          'num_hits: 8 != num_counted_on_fusion_contigs 6 ' => 42,
          'seq-similar region overlap' => 419,
          'num genes matched < 2' => 24,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 52,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 944
        };
-writing fusion junction support info.
Execution Time = 2.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[10000]   -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L

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[8000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[50000]   -fusion SPANNING read extraction for scaff: CARD14--LINC01483

[1000]   -fusion SPANNING read extraction for scaff: CCDC169--SOHLH2

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[93000]   -fusion SPANNING read extraction for scaff: CCDC196--GPHN

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[23000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

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[86000]   -fusion SPANNING read extraction for scaff: CYTH1--TBC1D16

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[186000]   -fusion SPANNING read extraction for scaff: DDX42--PECAM1

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[14000]   -fusion SPANNING read extraction for scaff: FBXO25--AC240565.1

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[102000]   -fusion SPANNING read extraction for scaff: FSIP1--AC013652.1

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[7000]   -fusion SPANNING read extraction for scaff: KLRC4--KLRK1

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[167000]   
[168000]   -fusion SPANNING read extraction for scaff: NF1--ABCA9-AS1

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[191000]   -fusion SPANNING read extraction for scaff: NF1--ABCA8

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[37000]   
[38000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

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[38000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

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[38000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

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[24000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHAC1

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[24000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHAC2

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[24000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHA13

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[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
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[8000]   
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[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
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[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
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[20000]   
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[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[20000]   
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[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[13000]   
[14000]   
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[19000]   
[20000]   
[21000]   
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[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
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[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGB3--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   -fusion SPANNING read extraction for scaff: SGSH--SKAP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   -fusion SPANNING read extraction for scaff: STXBP4--CASC17

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   -fusion SPANNING read extraction for scaff: TANC2--LINC00511

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   -fusion SPANNING read extraction for scaff: TBC1D16--NSFP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   -fusion SPANNING read extraction for scaff: TLK2--FAM157A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: UBE2Q2P1--GOLGA6L10

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
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[8000]   
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[40000]   
[41000]   
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[100000]   
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[472000]   -fusion SPANNING read extraction for scaff: ZFP36L1--IGH-@-ext
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 50691,
          'seq similar region alignment' => 162955
        };
Execution Time = 4.84 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -16963.414102
EM: Round [1] log likelihood: -16947.262210
EM: Round [2] log likelihood: -16937.700698
EM: Round [3] log likelihood: -16929.784612
EM: Round [4] log likelihood: -16922.945614
EM: Round [5] log likelihood: -16916.900693
EM: Round [6] log likelihood: -16911.492122
EM: Round [7] log likelihood: -16906.622967
EM: Round [8] log likelihood: -16902.226537
EM: Round [9] log likelihood: -16898.251506
EM: Round [10] log likelihood: -16894.654766
EM: Round [11] log likelihood: -16891.398137
EM: Round [12] log likelihood: -16888.446972
EM: Round [13] log likelihood: -16885.769607
EM: Round [14] log likelihood: -16883.337177
EM: Round [15] log likelihood: -16881.123512
EM: Round [16] log likelihood: -16879.105049
EM: Round [17] log likelihood: -16877.260703
EM: Round [18] log likelihood: -16875.571698
EM: Round [19] log likelihood: -16874.021387
EM: Round [20] log likelihood: -16872.595052
EM: Round [21] log likelihood: -16871.279699
EM: Round [22] log likelihood: -16870.063873
EM: Round [23] log likelihood: -16868.937475
EM: Round [24] log likelihood: -16867.891596
EM: Round [25] log likelihood: -16866.918375
EM: Round [26] log likelihood: -16866.010861
EM: Round [27] log likelihood: -16865.162904
EM: Round [28] log likelihood: -16864.369051
EM: Round [29] log likelihood: -16863.624458
EM: Round [30] log likelihood: -16862.924813
EM: Round [31] log likelihood: -16862.266272
EM: Round [32] log likelihood: -16861.645401
EM: Round [33] log likelihood: -16861.059123
EM: Round [34] log likelihood: -16860.504679
EM: Round [35] log likelihood: -16859.979590
EM: Round [36] log likelihood: -16859.481620
EM: Round [37] log likelihood: -16859.008754
EM: Round [38] log likelihood: -16858.559168
EM: Round [39] log likelihood: -16858.131210
EM: Round [40] log likelihood: -16857.723380
EM: Round [41] log likelihood: -16857.334314
EM: Round [42] log likelihood: -16856.962771
EM: Round [43] log likelihood: -16856.607615
EM: Round [44] log likelihood: -16856.267811
EM: Round [45] log likelihood: -16855.942408
EM: Round [46] log likelihood: -16855.630535
EM: Round [47] log likelihood: -16855.331389
EM: Round [48] log likelihood: -16855.044235
EM: Round [49] log likelihood: -16854.768391
EM: Round [50] log likelihood: -16854.503229
EM: Round [51] log likelihood: -16854.248168
EM: Round [52] log likelihood: -16854.002668
EM: Round [53] log likelihood: -16853.766230
EM: Round [54] log likelihood: -16853.538389
EM: Round [55] log likelihood: -16853.318713
EM: Round [56] log likelihood: -16853.106797
EM: Round [57] log likelihood: -16852.902266
EM: Round [58] log likelihood: -16852.704768
EM: Round [59] log likelihood: -16852.513972
EM: Round [60] log likelihood: -16852.329572
EM: Round [61] log likelihood: -16852.151276
EM: Round [62] log likelihood: -16851.978814
EM: Round [63] log likelihood: -16851.811928
EM: Round [64] log likelihood: -16851.650379
EM: Round [65] log likelihood: -16851.493939
EM: Round [66] log likelihood: -16851.342393
EM: Round [67] log likelihood: -16851.195540
EM: Round [68] log likelihood: -16851.053189
EM: Round [69] log likelihood: -16850.915157
EM: Round [70] log likelihood: -16850.781274
EM: Round [71] log likelihood: -16850.651377
EM: Round [72] log likelihood: -16850.525311
EM: Round [73] log likelihood: -16850.402931
EM: Round [74] log likelihood: -16850.284097
EM: Round [75] log likelihood: -16850.168676
EM: Round [76] log likelihood: -16850.056543
EM: Round [77] log likelihood: -16849.947577
EM: Round [78] log likelihood: -16849.841665
EM: Round [79] log likelihood: -16849.738697
EM: Round [80] log likelihood: -16849.638568
EM: Round [81] log likelihood: -16849.541180
EM: Round [82] log likelihood: -16849.446438
EM: Round [83] log likelihood: -16849.354250
EM: Round [84] log likelihood: -16849.264530
EM: Round [85] log likelihood: -16849.177195
EM: Round [86] log likelihood: -16849.092165
EM: Round [87] log likelihood: -16849.009363
EM: Round [88] log likelihood: -16848.928717
EM: Round [89] log likelihood: -16848.850157
EM: Round [90] log likelihood: -16848.773615
EM: Round [91] log likelihood: -16848.699026
EM: Round [92] log likelihood: -16848.626329
EM: Round [93] log likelihood: -16848.555464
EM: Round [94] log likelihood: -16848.486374
EM: Round [95] log likelihood: -16848.419004
EM: Round [96] log likelihood: -16848.353300
EM: Round [97] log likelihood: -16848.289212
EM: Round [98] log likelihood: -16848.226691
EM: Round [99] log likelihood: -16848.165690
EM: Round [100] log likelihood: -16848.106162
EM: Round [101] log likelihood: -16848.048065
EM: Round [102] log likelihood: -16847.991357
EM: Round [103] log likelihood: -16847.935995
EM: Round [104] log likelihood: -16847.881942
EM: Round [105] log likelihood: -16847.829159
EM: Round [106] log likelihood: -16847.777609
EM: Round [107] log likelihood: -16847.727258
EM: Round [108] log likelihood: -16847.678071
EM: Round [109] log likelihood: -16847.630016
EM: Round [110] log likelihood: -16847.583060
EM: Round [111] log likelihood: -16847.537174
EM: Round [112] log likelihood: -16847.492326
EM: Round [113] log likelihood: -16847.448489
EM: Round [114] log likelihood: -16847.405635
EM: Round [115] log likelihood: -16847.363737
EM: Round [116] log likelihood: -16847.322769
EM: Round [117] log likelihood: -16847.282706
EM: Round [118] log likelihood: -16847.243524
EM: Round [119] log likelihood: -16847.205199
EM: Round [120] log likelihood: -16847.167707
EM: Round [121] log likelihood: -16847.131029
EM: Round [122] log likelihood: -16847.095141
EM: Round [123] log likelihood: -16847.060023
EM: Round [124] log likelihood: -16847.025655
EM: Round [125] log likelihood: -16846.992018
EM: Round [126] log likelihood: -16846.959092
EM: Round [127] log likelihood: -16846.926861
EM: Round [128] log likelihood: -16846.895305
EM: Round [129] log likelihood: -16846.864407
EM: Round [130] log likelihood: -16846.834152
EM: Round [131] log likelihood: -16846.804522
EM: Round [132] log likelihood: -16846.775502
EM: Round [133] log likelihood: -16846.747078
EM: Round [134] log likelihood: -16846.719233
EM: Round [135] log likelihood: -16846.691954
EM: Round [136] log likelihood: -16846.665227
EM: Round [137] log likelihood: -16846.639038
EM: Round [138] log likelihood: -16846.613375
EM: Round [139] log likelihood: -16846.588223
EM: Round [140] log likelihood: -16846.563572
EM: Round [141] log likelihood: -16846.539409
EM: Round [142] log likelihood: -16846.515722
EM: Round [143] log likelihood: -16846.492500
EM: Round [144] log likelihood: -16846.469732
EM: Round [145] log likelihood: -16846.447407
EM: Round [146] log likelihood: -16846.425514
EM: Round [147] log likelihood: -16846.404044
EM: Round [148] log likelihood: -16846.382987
EM: Round [149] log likelihood: -16846.362333
EM: Round [150] log likelihood: -16846.342072
EM: Round [151] log likelihood: -16846.322197
EM: Round [152] log likelihood: -16846.302697
EM: Round [153] log likelihood: -16846.283564
EM: Round [154] log likelihood: -16846.264790
EM: Round [155] log likelihood: -16846.246367
EM: Round [156] log likelihood: -16846.228286
EM: Round [157] log likelihood: -16846.210541
EM: Round [158] log likelihood: -16846.193123
EM: Round [159] log likelihood: -16846.176025
EM: Round [160] log likelihood: -16846.159241
EM: Round [161] log likelihood: -16846.142762
EM: Round [162] log likelihood: -16846.126584
EM: Round [163] log likelihood: -16846.110697
EM: Round [164] log likelihood: -16846.095098
EM: Round [165] log likelihood: -16846.079779
EM: Round [166] log likelihood: -16846.064733
EM: Round [167] log likelihood: -16846.049956
EM: Round [168] log likelihood: -16846.035442
EM: Round [169] log likelihood: -16846.021184
EM: Round [170] log likelihood: -16846.007178
EM: Round [171] log likelihood: -16845.993417
EM: Round [172] log likelihood: -16845.979898
EM: Round [173] log likelihood: -16845.966614
EM: Round [174] log likelihood: -16845.953560
EM: Round [175] log likelihood: -16845.940733
EM: Round [176] log likelihood: -16845.928127
EM: Round [177] log likelihood: -16845.915737
EM: Round [178] log likelihood: -16845.903560
EM: Round [179] log likelihood: -16845.891590
EM: Round [180] log likelihood: -16845.879824
EM: Round [181] log likelihood: -16845.868257
EM: Round [182] log likelihood: -16845.856885
EM: Round [183] log likelihood: -16845.845705
EM: Round [184] log likelihood: -16845.834712
EM: Round [185] log likelihood: -16845.823903
EM: Round [186] log likelihood: -16845.813274
EM: Round [187] log likelihood: -16845.802821
EM: Round [188] log likelihood: -16845.792541
EM: Round [189] log likelihood: -16845.782430
EM: Round [190] log likelihood: -16845.772486
EM: Round [191] log likelihood: -16845.762704
EM: Round [192] log likelihood: -16845.753082
EM: Round [193] log likelihood: -16845.743616
EM: Round [194] log likelihood: -16845.734304
EM: Round [195] log likelihood: -16845.725142
EM: Round [196] log likelihood: -16845.716128
EM: Round [197] log likelihood: -16845.707259
EM: Round [198] log likelihood: -16845.698532
EM: Round [199] log likelihood: -16845.689943
EM: Round [200] log likelihood: -16845.681492
EM: Round [201] log likelihood: -16845.673174
EM: Round [202] log likelihood: -16845.664988
EM: Round [203] log likelihood: -16845.656931
EM: Round [204] log likelihood: -16845.649001
EM: Round [205] log likelihood: -16845.641194
EM: Round [206] log likelihood: -16845.633510
EM: Round [207] log likelihood: -16845.625945
EM: Round [208] log likelihood: -16845.618498
EM: Round [209] log likelihood: -16845.611166
EM: Round [210] log likelihood: -16845.603947
EM: Round [211] log likelihood: -16845.596839
EM: Round [212] log likelihood: -16845.589840
EM: Round [213] log likelihood: -16845.582949
EM: Round [214] log likelihood: -16845.576162
EM: Round [215] log likelihood: -16845.569479
EM: Round [216] log likelihood: -16845.562897
EM: Round [217] log likelihood: -16845.556415
EM: Round [218] log likelihood: -16845.550030
EM: Round [219] log likelihood: -16845.543742
EM: Round [220] log likelihood: -16845.537548
EM: Round [221] log likelihood: -16845.531446
EM: Round [222] log likelihood: -16845.525436
EM: Round [223] log likelihood: -16845.519515
EM: Round [224] log likelihood: -16845.513682
EM: Round [225] log likelihood: -16845.507935
EM: Round [226] log likelihood: -16845.502273
EM: Round [227] log likelihood: -16845.496695
EM: Round [228] log likelihood: -16845.491199
EM: Round [229] log likelihood: -16845.485783
EM: Round [230] log likelihood: -16845.480446
EM: Round [231] log likelihood: -16845.475187
EM: Round [232] log likelihood: -16845.470005
EM: Round [233] log likelihood: -16845.464898
EM: Round [234] log likelihood: -16845.459864
EM: Round [235] log likelihood: -16845.454904
EM: Round [236] log likelihood: -16845.450015
EM: Round [237] log likelihood: -16845.445196
EM: Round [238] log likelihood: -16845.440446
EM: Round [239] log likelihood: -16845.435764
EM: Round [240] log likelihood: -16845.431149
EM: Round [241] log likelihood: -16845.426600
EM: Round [242] log likelihood: -16845.422115
EM: Round [243] log likelihood: -16845.417694
EM: Round [244] log likelihood: -16845.413335
EM: Round [245] log likelihood: -16845.409038
EM: Round [246] log likelihood: -16845.404802
EM: Round [247] log likelihood: -16845.400624
EM: Round [248] log likelihood: -16845.396506
EM: Round [249] log likelihood: -16845.392445
EM: Round [250] log likelihood: -16845.388441
EM: Round [251] log likelihood: -16845.384492
EM: Round [252] log likelihood: -16845.380599
EM: Round [253] log likelihood: -16845.376759
EM: Round [254] log likelihood: -16845.372973
EM: Round [255] log likelihood: -16845.369238
EM: Round [256] log likelihood: -16845.365556
EM: Round [257] log likelihood: -16845.361924
EM: Round [258] log likelihood: -16845.358342
EM: Round [259] log likelihood: -16845.354808
EM: Round [260] log likelihood: -16845.351324
EM: Round [261] log likelihood: -16845.347886
EM: Round [262] log likelihood: -16845.344496
EM: Round [263] log likelihood: -16845.341152
EM: Round [264] log likelihood: -16845.337853
EM: Round [265] log likelihood: -16845.334599
EM: Round [266] log likelihood: -16845.331389
EM: Round [267] log likelihood: -16845.328222
EM: Round [268] log likelihood: -16845.325097
EM: Round [269] log likelihood: -16845.322015
EM: Round [270] log likelihood: -16845.318974
EM: Round [271] log likelihood: -16845.315974
EM: Round [272] log likelihood: -16845.313014
EM: Round [273] log likelihood: -16845.310094
EM: Round [274] log likelihood: -16845.307212
EM: Round [275] log likelihood: -16845.304369
EM: Round [276] log likelihood: -16845.301564
EM: Round [277] log likelihood: -16845.298796
EM: Round [278] log likelihood: -16845.296064
EM: Round [279] log likelihood: -16845.293369
EM: Round [280] log likelihood: -16845.290709
EM: Round [281] log likelihood: -16845.288084
EM: Round [282] log likelihood: -16845.285493
EM: Round [283] log likelihood: -16845.282937
EM: Round [284] log likelihood: -16845.280414
EM: Round [285] log likelihood: -16845.277924
EM: Round [286] log likelihood: -16845.275467
EM: Round [287] log likelihood: -16845.273042
EM: Round [288] log likelihood: -16845.270648
EM: Round [289] log likelihood: -16845.268286
EM: Round [290] log likelihood: -16845.265954
EM: Round [291] log likelihood: -16845.263652
EM: Round [292] log likelihood: -16845.261381
EM: Round [293] log likelihood: -16845.259138
EM: Round [294] log likelihood: -16845.256925
EM: Round [295] log likelihood: -16845.254740
EM: Round [296] log likelihood: -16845.252583
EM: Round [297] log likelihood: -16845.250454
EM: Round [298] log likelihood: -16845.248353
EM: Round [299] log likelihood: -16845.246278
EM: Round [300] log likelihood: -16845.244230
EM: Round [301] log likelihood: -16845.242208
EM: Round [302] log likelihood: -16845.240212
EM: Round [303] log likelihood: -16845.238241
EM: Round [304] log likelihood: -16845.236295
EM: Round [305] log likelihood: -16845.234374
EM: Round [306] log likelihood: -16845.232478
EM: Round [307] log likelihood: -16845.230606
EM: Round [308] log likelihood: -16845.228757
EM: Round [309] log likelihood: -16845.226931
EM: Round [310] log likelihood: -16845.225129
EM: Round [311] log likelihood: -16845.223350
EM: Round [312] log likelihood: -16845.221593
EM: Round [313] log likelihood: -16845.219858
EM: Round [314] log likelihood: -16845.218145
EM: Round [315] log likelihood: -16845.216453
EM: Round [316] log likelihood: -16845.214783
EM: Round [317] log likelihood: -16845.213133
EM: Round [318] log likelihood: -16845.211504
EM: Round [319] log likelihood: -16845.209896
EM: Round [320] log likelihood: -16845.208307
EM: Round [321] log likelihood: -16845.206739
EM: Round [322] log likelihood: -16845.205190
EM: Round [323] log likelihood: -16845.203660
EM: Round [324] log likelihood: -16845.202149
EM: Round [325] log likelihood: -16845.200657
EM: Round [326] log likelihood: -16845.199184
EM: Round [327] log likelihood: -16845.197728
EM: Round [328] log likelihood: -16845.196291
EM: Round [329] log likelihood: -16845.194872
EM: Round [330] log likelihood: -16845.193470
EM: Round [331] log likelihood: -16845.192085
EM: Round [332] log likelihood: -16845.190717
EM: Round [333] log likelihood: -16845.189366
EM: Round [334] log likelihood: -16845.188032
EM: Round [335] log likelihood: -16845.186715
EM: Round [336] log likelihood: -16845.185413
EM: Round [337] log likelihood: -16845.184127
EM: Round [338] log likelihood: -16845.182857
EM: Round [339] log likelihood: -16845.181603
EM: Round [340] log likelihood: -16845.180364
EM: Round [341] log likelihood: -16845.179140
EM: Round [342] log likelihood: -16845.177931
EM: Round [343] log likelihood: -16845.176737
EM: Round [344] log likelihood: -16845.175557
EM: Round [345] log likelihood: -16845.174392
EM: Round [346] log likelihood: -16845.173240
EM: Round [347] log likelihood: -16845.172103
EM: Round [348] log likelihood: -16845.170980
EM: Round [349] log likelihood: -16845.169870
EM: Round [350] log likelihood: -16845.168773
EM: Round [351] log likelihood: -16845.167690
EM: Round [352] log likelihood: -16845.166620
EM: Round [353] log likelihood: -16845.165563
EM: Round [354] log likelihood: -16845.164519
EM: Round [355] log likelihood: -16845.163487
EM: Round [356] log likelihood: -16845.162468
EM: Round [357] log likelihood: -16845.161461
EM: Round [358] log likelihood: -16845.160466
EM: Round [359] log likelihood: -16845.159483
EM: Round [360] log likelihood: -16845.158511
EM: Round [361] log likelihood: -16845.157552
EM: Round [362] log likelihood: -16845.156604
EM: Round [363] log likelihood: -16845.155667
EM: Round [364] log likelihood: -16845.154742
EM: Round [365] log likelihood: -16845.153827
EM: Round [366] log likelihood: -16845.152924
EM: Round [367] log likelihood: -16845.152031
EM: Round [368] log likelihood: -16845.151149
EM: Round [369] log likelihood: -16845.150277
EM: Round [370] log likelihood: -16845.149416
EM: Round [371] log likelihood: -16845.148565
EM: Round [372] log likelihood: -16845.147724
EM: Round [373] log likelihood: -16845.146893
EM: Round [374] log likelihood: -16845.146072
EM: Round [375] log likelihood: -16845.145261
EM: Round [376] log likelihood: -16845.144460
EM: Round [377] log likelihood: -16845.143668
EM: Round [378] log likelihood: -16845.142885
EM: Round [379] log likelihood: -16845.142111
EM: Round [380] log likelihood: -16845.141347
EM: Round [381] log likelihood: -16845.140592
EM: Round [382] log likelihood: -16845.139845
EM: Round [383] log likelihood: -16845.139108
EM: Round [384] log likelihood: -16845.138379
EM: Round [385] log likelihood: -16845.137658
EM: Round [386] log likelihood: -16845.136947
EM: Round [387] log likelihood: -16845.136243
EM: Round [388] log likelihood: -16845.135548
EM: Round [389] log likelihood: -16845.134861
EM: Round [390] log likelihood: -16845.134182
EM: Round [391] log likelihood: -16845.133511
EM: Round [392] log likelihood: -16845.132848
EM: Round [393] log likelihood: -16845.132193
EM: Round [394] log likelihood: -16845.131545
EM: Round [395] log likelihood: -16845.130905
EM: Round [396] log likelihood: -16845.130272
EM: Round [397] log likelihood: -16845.129647
EM: Round [398] log likelihood: -16845.129029
EM: Round [399] log likelihood: -16845.128419
EM: Round [400] log likelihood: -16845.127815
EM: Round [401] log likelihood: -16845.127218
EM: Round [402] log likelihood: -16845.126629
EM: Round [403] log likelihood: -16845.126046
EM: Round [404] log likelihood: -16845.125470
EM: Round [405] log likelihood: -16845.124901
EM: Round [406] log likelihood: -16845.124339
EM: Round [407] log likelihood: -16845.123782
EM: Round [408] log likelihood: -16845.123233
EM: Round [409] log likelihood: -16845.122690
EM: Round [410] log likelihood: -16845.122153
EM: Round [411] log likelihood: -16845.121622
EM: Round [412] log likelihood: -16845.121097
EM: Round [413] log likelihood: -16845.120579
EM: Round [414] log likelihood: -16845.120067
EM: Round [415] log likelihood: -16845.119560
EM: Round [416] log likelihood: -16845.119059
EM: Round [417] log likelihood: -16845.118564
EM: Round [418] log likelihood: -16845.118075
EM: Round [419] log likelihood: -16845.117592
EM: Round [420] log likelihood: -16845.117114
EM: Round [421] log likelihood: -16845.116641
EM: Round [422] log likelihood: -16845.116174
EM: Round [423] log likelihood: -16845.115713
EM: Round [424] log likelihood: -16845.115256
EM: Round [425] log likelihood: -16845.114805
EM: Round [426] log likelihood: -16845.114359
EM: Round [427] log likelihood: -16845.113919
EM: Round [428] log likelihood: -16845.113483
EM: Round [429] log likelihood: -16845.113052
EM: Round [430] log likelihood: -16845.112627
EM: Round [431] log likelihood: -16845.112206
EM: Round [432] log likelihood: -16845.111790
EM: Round [433] log likelihood: -16845.111379
EM: Round [434] log likelihood: -16845.110972
EM: Round [435] log likelihood: -16845.110570
EM: Round [436] log likelihood: -16845.110173
EM: Round [437] log likelihood: -16845.109780
EM: Round [438] log likelihood: -16845.109392
EM: Round [439] log likelihood: -16845.109008
EM: Round [440] log likelihood: -16845.108629
EM: Round [441] log likelihood: -16845.108254
EM: Round [442] log likelihood: -16845.107883
EM: Round [443] log likelihood: -16845.107516
EM: Round [444] log likelihood: -16845.107154
EM: Round [445] log likelihood: -16845.106796
EM: Round [446] log likelihood: -16845.106441
EM: Round [447] log likelihood: -16845.106091
EM: Round [448] log likelihood: -16845.105745
EM: Round [449] log likelihood: -16845.105403
EM: Round [450] log likelihood: -16845.105065
EM: Round [451] log likelihood: -16845.104730
EM: Round [452] log likelihood: -16845.104399
EM: Round [453] log likelihood: -16845.104072
EM: Round [454] log likelihood: -16845.103749
EM: Round [455] log likelihood: -16845.103430
EM: Round [456] log likelihood: -16845.103114
EM: Round [457] log likelihood: -16845.102802
EM: Round [458] log likelihood: -16845.102493
EM: Round [459] log likelihood: -16845.102187
EM: Round [460] log likelihood: -16845.101886
EM: Round [461] log likelihood: -16845.101587
EM: Round [462] log likelihood: -16845.101292
EM: Round [463] log likelihood: -16845.101001
EM: Round [464] log likelihood: -16845.100712
EM: Round [465] log likelihood: -16845.100427
EM: Round [466] log likelihood: -16845.100145
EM: Round [467] log likelihood: -16845.099866
EM: Round [468] log likelihood: -16845.099591
EM: Round [469] log likelihood: -16845.099318
EM: Round [470] log likelihood: -16845.099049
EM: Round [471] log likelihood: -16845.098783
EM: Round [472] log likelihood: -16845.098519
EM: Round [473] log likelihood: -16845.098259
EM: Round [474] log likelihood: -16845.098002
EM: Round [475] log likelihood: -16845.097747
EM: Round [476] log likelihood: -16845.097495
EM: Round [477] log likelihood: -16845.097246
EM: Round [478] log likelihood: -16845.097000
EM: Round [479] log likelihood: -16845.096757
EM: Round [480] log likelihood: -16845.096517
EM: Round [481] log likelihood: -16845.096279
EM: Round [482] log likelihood: -16845.096044
EM: Round [483] log likelihood: -16845.095811
EM: Round [484] log likelihood: -16845.095581
EM: Round [485] log likelihood: -16845.095354
EM: Round [486] log likelihood: -16845.095129
EM: Round [487] log likelihood: -16845.094907
EM: Round [488] log likelihood: -16845.094687
EM: Round [489] log likelihood: -16845.094470
EM: Round [490] log likelihood: -16845.094255
EM: Round [491] log likelihood: -16845.094043
EM: Round [492] log likelihood: -16845.093833
EM: Round [493] log likelihood: -16845.093625
EM: Round [494] log likelihood: -16845.093419
EM: Round [495] log likelihood: -16845.093216
EM: Round [496] log likelihood: -16845.093016
EM: Round [497] log likelihood: -16845.092817
EM: Round [498] log likelihood: -16845.092621
EM: Round [499] log likelihood: -16845.092427
EM: Round [500] log likelihood: -16845.092235
EM: Round [501] log likelihood: -16845.092045
EM: Round [502] log likelihood: -16845.091857
EM: Round [503] log likelihood: -16845.091671
EM: Round [504] log likelihood: -16845.091488
EM: Round [505] log likelihood: -16845.091306
EM: Round [506] log likelihood: -16845.091127
EM: Round [507] log likelihood: -16845.090949
EM: Round [508] log likelihood: -16845.090774
EM: Round [509] log likelihood: -16845.090600
EM: Round [510] log likelihood: -16845.090429
EM: Round [511] log likelihood: -16845.090259
EM: Round [512] log likelihood: -16845.090091
EM: Round [513] log likelihood: -16845.089925
EM: Round [514] log likelihood: -16845.089761
EM: Round [515] log likelihood: -16845.089599
EM: Round [516] log likelihood: -16845.089439
EM: Round [517] log likelihood: -16845.089280
EM: Round [518] log likelihood: -16845.089123
EM: Round [519] log likelihood: -16845.088968
EM: Round [520] log likelihood: -16845.088814
EM: Round [521] log likelihood: -16845.088663
EM: Round [522] log likelihood: -16845.088513
EM: Round [523] log likelihood: -16845.088364
EM: Round [524] log likelihood: -16845.088217
EM: Round [525] log likelihood: -16845.088072
EM: Round [526] log likelihood: -16845.087929
EM: Round [527] log likelihood: -16845.087787
EM: Round [528] log likelihood: -16845.087647
EM: Round [529] log likelihood: -16845.087508
EM: Round [530] log likelihood: -16845.087371
EM: Round [531] log likelihood: -16845.087235
EM: Round [532] log likelihood: -16845.087101
EM: Round [533] log likelihood: -16845.086968
EM: Round [534] log likelihood: -16845.086837
EM: Round [535] log likelihood: -16845.086707
EM: Round [536] log likelihood: -16845.086579
EM: Round [537] log likelihood: -16845.086452
EM: Round [538] log likelihood: -16845.086326
EM: Round [539] log likelihood: -16845.086202
EM: Round [540] log likelihood: -16845.086079
EM: Round [541] log likelihood: -16845.085958
EM: Round [542] log likelihood: -16845.085838
EM: Round [543] log likelihood: -16845.085719
EM: Round [544] log likelihood: -16845.085601
EM: Round [545] log likelihood: -16845.085485
EM: Round [546] log likelihood: -16845.085370
EM: Round [547] log likelihood: -16845.085257
EM: Round [548] log likelihood: -16845.085144
EM: Round [549] log likelihood: -16845.085033
EM: Round [550] log likelihood: -16845.084924
EM: Round [551] log likelihood: -16845.084815
EM: Round [552] log likelihood: -16845.084707
EM: Round [553] log likelihood: -16845.084601
EM: Round [554] log likelihood: -16845.084496
EM: Round [555] log likelihood: -16845.084392
EM: Round [556] log likelihood: -16845.084289
EM: Round [557] log likelihood: -16845.084188
EM: Round [558] log likelihood: -16845.084087
EM: Round [559] log likelihood: -16845.083988
EM: Stopping iterations at round 559 due to insufficient improvement in likelihood.
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam"
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam || : 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam || : 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam
Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam --max_insert_size 10000000 
-extracting read coordinates from /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.92 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam --max_insert_size 10000000 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.FusionJuncSpan
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.gff3 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.gff3 > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.gff3 > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa > /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.RoggYmtauT/fi_workdir/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir
-done, see /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -10242.092571
EM: Round [1] log likelihood: -10239.481064
EM: Round [2] log likelihood: -10239.468560
EM: Round [3] log likelihood: -10239.468474
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 285242651
Execution Time = 5.57 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa --gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  > /tmp/nxf.RoggYmtauT/fi_workdir/microH.dat
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fa --gtf /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gtf  > /tmp/nxf.RoggYmtauT/fi_workdir/microH.dat
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.RoggYmtauT/fi_workdir/microH.dat /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.RoggYmtauT/fi_workdir/microH.dat /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.RoggYmtauT --json_outfile /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.RoggYmtauT --json_outfile /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --html_output /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.03 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1 --html_output /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000260075.1]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000231749.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000260785.2]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.RoggYmtauT/ctat_genome_lib_build_dir > /tmp/nxf.RoggYmtauT/aih-tih-sc-5ceb9a-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
Running: touch /tmp/nxf.RoggYmtauT/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory