File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c0ede35191402d0e8580d3fe79a0d4/.command.log
Size
21.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/f2b6d7c2ebaeaea2a4a453c3eed9d9/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/843019838269f8900184211ea8775d/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c0ede35191402d0e8580d3fe79a0d4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c0ede35191402d0e8580d3fe79a0d4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AKAP13--SNUPN
starfusion
arriba
FGFR1--IDO2
starfusion
arriba
SNUPN--MTSS1
starfusion
arriba
MAP2K5--SCAPER
starfusion
arriba
NECTIN4--CDKAL1
starfusion
arriba
PTPN9--PARP6
starfusion
arriba
IQCH-AS1--ADAM10
starfusion
arriba
VKORC1L1--AC090517.5
starfusion
arriba
AKAP13--SEMA6D
starfusion
arriba
CLN6--CLCN3P1
starfusion
EXOC6B--CLIC3
starfusion
arriba
SNX24--PRDM6
starfusion
arriba
PRSS27--TPSB2
starfusion
LINC02852--IQCH
starfusion
arriba
APH1A--PI4KB
starfusion
arriba
IL16--ZNF609
starfusion
arriba
KDM2A--GRK2
starfusion
arriba
PCNT--RYR2
starfusion
arriba
RAB11FIP1--FP236383.3
starfusion
arriba
ADAM10--IL16
starfusion
arriba
CASK--PRTG
starfusion
arriba
PTPN9--CCDC33
starfusion
arriba
AL390334.1--NFIB
starfusion
NR2C2--AC138776.1
starfusion
ARPP19--IQCH
starfusion
ARNT--ADAMTSL4
starfusion
arriba
SORD--AC009558.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
NR2C2--AC114947.1
starfusion
arriba
JAK2--HIVEP1
starfusion
arriba
FAM126B--CFLAR
starfusion
arriba
TLK2--AC240565.1
starfusion
RARS1--AC117834.1
starfusion
NR2C2--AC097374.1
starfusion
ASH1L--ARNT
starfusion
ACTBP6--ACTB
starfusion
AC136431.1--PKD1P5
starfusion
DYSF--PPP1CB
starfusion
CA8--LINC01301
starfusion
arriba
C15orf61--RBPMS2
starfusion
SCARB2--CXCL11
starfusion
RELA--RELA-DT
starfusion
PFN2--RNF13
starfusion
arriba
ARID3B--AC012378.1
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
PRTG--FER1L6
starfusion
AL139042.1--CNR1
starfusion
ARPP19--AC009432.1
arriba
ARPP19--AC022308.1
arriba
ADAMTS7P4--SNUPN
arriba
ETFA--RBPMS2
arriba
CDKAL1--CDKAL1
arriba
AC009432.1--IQCH
arriba
AC022308.1--IQCH
arriba
AKAP13--ADAMTS7P4
arriba
AKAP13--AKAP13
arriba
CLN6--AL135790.1
arriba
CLN6--AL161788.1
arriba
USP3--AC019294.2
arriba
NECTIN4--NECTIN4
arriba
COBL--GLI3
arriba
ZNF229--AL357052.1
arriba
PLEKHO2--PBX3
arriba
PLEKHO2--AL589923.1
arriba
SORD--SEMA6D
arriba
LCLAT1--HMGB1P25
arriba
LCLAT1--RPL30P3
arriba
PCLAF--AKAP13
arriba
FGFR1--AC007991.3
arriba
ATF6--UHMK1
arriba
ATF6--UQCRBP2
arriba
AC092807.3--DDAH1
arriba
SKAP1--EPHA1-AS1
arriba
NR2C2--AC140113.1
arriba
NR2C2--AC134878.1
arriba
PCLAF--AC100830.1
arriba
PCLAF--RBPMS2
arriba
JARID2--HULC
arriba
MCU--MCU
arriba
CCDC33--INSYN1-AS1
arriba
CCDC33--AC018943.1
arriba
CGN--VPS45
arriba
ZNF566--FP671120.8
arriba
ZNF566--MIR6724-2
arriba
SQOR--LINC02055
arriba
ARID3B--SQOR
arriba
CA8--CA8
arriba
RPS15A--CCP110
arriba
ARL6IP1--CCP110
arriba
ATF6--AL583804.1
arriba
ATF6--FMO7P
arriba
MPDZ--AL353595.1
arriba
CRYZL2P--SEC16B
arriba
GTF2IP23--FBN1
arriba
RNU6-1254P--FBN1
arriba
AC009432.2--IQCH
arriba
RNF13--ANKUB1
arriba
RNF13--RNF13
arriba
TLE3--CTDSPL2
arriba
RNU6-745P--CTDSPL2
arriba
RBL1--AC104042.1
arriba
RBL1--AC061997.1
arriba
SLFN11--SLFN12
arriba

  0%|          | 0/103 [00:00<?, ?it/s]
Processing AKAP13--SNUPN:   0%|          | 0/103 [00:00<?, ?it/s]
Processing AKAP13--SNUPN:   1%|          | 1/103 [00:00<00:11,  9.25it/s]
Processing FGFR1--IDO2:   1%|          | 1/103 [00:00<00:11,  9.25it/s]  
Processing FGFR1--IDO2:   2%|▏         | 2/103 [00:00<00:10,  9.48it/s]
Processing SNUPN--MTSS1:   2%|▏         | 2/103 [00:00<00:10,  9.48it/s]
Processing SNUPN--MTSS1:   3%|▎         | 3/103 [00:00<00:10,  9.56it/s]
Processing MAP2K5--SCAPER:   3%|▎         | 3/103 [00:00<00:10,  9.56it/s]
Processing MAP2K5--SCAPER:   4%|▍         | 4/103 [00:00<00:10,  9.59it/s]
Processing NECTIN4--CDKAL1:   4%|▍         | 4/103 [00:00<00:10,  9.59it/s]
Processing NECTIN4--CDKAL1:   5%|▍         | 5/103 [00:00<00:10,  9.61it/s]
Processing PTPN9--PARP6:   5%|▍         | 5/103 [00:00<00:10,  9.61it/s]   
Processing PTPN9--PARP6:   6%|▌         | 6/103 [00:00<00:10,  9.60it/s]
Processing IQCH-AS1--ADAM10:   6%|▌         | 6/103 [00:00<00:10,  9.60it/s]
Processing IQCH-AS1--ADAM10:   7%|▋         | 7/103 [00:00<00:09,  9.62it/s]
Processing VKORC1L1--AC090517.5:   7%|▋         | 7/103 [00:00<00:09,  9.62it/s]
Processing VKORC1L1--AC090517.5:   8%|▊         | 8/103 [00:00<00:09,  9.62it/s]
Processing AKAP13--SEMA6D:   8%|▊         | 8/103 [00:00<00:09,  9.62it/s]      
Processing AKAP13--SEMA6D:   9%|▊         | 9/103 [00:00<00:09,  9.63it/s]
Processing CLN6--CLCN3P1:   9%|▊         | 9/103 [00:00<00:09,  9.63it/s] 
Processing CLN6--CLCN3P1:  10%|▉         | 10/103 [00:01<00:09,  9.63it/s]
Processing EXOC6B--CLIC3:  10%|▉         | 10/103 [00:01<00:09,  9.63it/s]
Processing EXOC6B--CLIC3:  11%|█         | 11/103 [00:01<00:09,  9.64it/s]
Processing SNX24--PRDM6:  11%|█         | 11/103 [00:01<00:09,  9.64it/s] 
Processing SNX24--PRDM6:  12%|█▏        | 12/103 [00:01<00:09,  9.64it/s]
Processing PRSS27--TPSB2:  12%|█▏        | 12/103 [00:01<00:09,  9.64it/s]
Processing PRSS27--TPSB2:  13%|█▎        | 13/103 [00:01<00:09,  9.64it/s]
Processing LINC02852--IQCH:  13%|█▎        | 13/103 [00:01<00:09,  9.64it/s]
Processing LINC02852--IQCH:  14%|█▎        | 14/103 [00:01<00:09,  9.64it/s]
Processing APH1A--PI4KB:  14%|█▎        | 14/103 [00:01<00:09,  9.64it/s]   
Processing APH1A--PI4KB:  15%|█▍        | 15/103 [00:01<00:09,  9.64it/s]
Processing IL16--ZNF609:  15%|█▍        | 15/103 [00:01<00:09,  9.64it/s]
Processing IL16--ZNF609:  16%|█▌        | 16/103 [00:01<00:09,  9.64it/s]
Processing KDM2A--GRK2:  16%|█▌        | 16/103 [00:01<00:09,  9.64it/s] 
Processing KDM2A--GRK2:  17%|█▋        | 17/103 [00:01<00:08,  9.64it/s]
Processing PCNT--RYR2:  17%|█▋        | 17/103 [00:01<00:08,  9.64it/s] 
Processing PCNT--RYR2:  17%|█▋        | 18/103 [00:01<00:08,  9.64it/s]
Processing RAB11FIP1--FP236383.3:  17%|█▋        | 18/103 [00:01<00:08,  9.64it/s]
Processing RAB11FIP1--FP236383.3:  18%|█▊        | 19/103 [00:01<00:08,  9.64it/s]
Processing ADAM10--IL16:  18%|█▊        | 19/103 [00:01<00:08,  9.64it/s]         
Processing ADAM10--IL16:  19%|█▉        | 20/103 [00:02<00:08,  9.64it/s]
Processing CASK--PRTG:  19%|█▉        | 20/103 [00:02<00:08,  9.64it/s]  
Processing CASK--PRTG:  20%|██        | 21/103 [00:02<00:08,  9.64it/s]
Processing PTPN9--CCDC33:  20%|██        | 21/103 [00:02<00:08,  9.64it/s]
Processing PTPN9--CCDC33:  21%|██▏       | 22/103 [00:02<00:08,  9.64it/s]
Processing AL390334.1--NFIB:  21%|██▏       | 22/103 [00:02<00:08,  9.64it/s]
Processing AL390334.1--NFIB:  22%|██▏       | 23/103 [00:02<00:08,  9.65it/s]
Processing NR2C2--AC138776.1:  22%|██▏       | 23/103 [00:02<00:08,  9.65it/s]
Processing NR2C2--AC138776.1:  23%|██▎       | 24/103 [00:02<00:08,  9.65it/s]
Processing ARPP19--IQCH:  23%|██▎       | 24/103 [00:02<00:08,  9.65it/s]     
Processing ARPP19--IQCH:  24%|██▍       | 25/103 [00:02<00:08,  9.64it/s]
Processing ARNT--ADAMTSL4:  24%|██▍       | 25/103 [00:02<00:08,  9.64it/s]
Processing ARNT--ADAMTSL4:  25%|██▌       | 26/103 [00:02<00:07,  9.64it/s]
Processing SORD--AC009558.1:  25%|██▌       | 26/103 [00:02<00:07,  9.64it/s]
Processing SORD--AC009558.1:  26%|██▌       | 27/103 [00:02<00:07,  9.63it/s]
Processing TLK2P1--AC110079.1:  26%|██▌       | 27/103 [00:02<00:07,  9.63it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 28/103 [00:02<00:07,  9.63it/s]
Processing NR2C2--AC114947.1:  27%|██▋       | 28/103 [00:02<00:07,  9.63it/s] 
Processing NR2C2--AC114947.1:  28%|██▊       | 29/103 [00:03<00:07,  9.64it/s]
Processing JAK2--HIVEP1:  28%|██▊       | 29/103 [00:03<00:07,  9.64it/s]     
Processing JAK2--HIVEP1:  29%|██▉       | 30/103 [00:03<00:07,  9.64it/s]
Processing FAM126B--CFLAR:  29%|██▉       | 30/103 [00:03<00:07,  9.64it/s]
Processing FAM126B--CFLAR:  30%|███       | 31/103 [00:03<00:07,  9.64it/s]
Processing TLK2--AC240565.1:  30%|███       | 31/103 [00:03<00:07,  9.64it/s]
Processing TLK2--AC240565.1:  31%|███       | 32/103 [00:03<00:07,  9.64it/s]
Processing RARS1--AC117834.1:  31%|███       | 32/103 [00:03<00:07,  9.64it/s]
Processing RARS1--AC117834.1:  32%|███▏      | 33/103 [00:03<00:07,  9.64it/s]
Processing NR2C2--AC097374.1:  32%|███▏      | 33/103 [00:03<00:07,  9.64it/s]
Processing NR2C2--AC097374.1:  33%|███▎      | 34/103 [00:03<00:07,  9.65it/s]
Processing ASH1L--ARNT:  33%|███▎      | 34/103 [00:03<00:07,  9.65it/s]      
Processing ASH1L--ARNT:  34%|███▍      | 35/103 [00:03<00:07,  9.65it/s]
Processing ACTBP6--ACTB:  34%|███▍      | 35/103 [00:03<00:07,  9.65it/s]
Processing ACTBP6--ACTB:  35%|███▍      | 36/103 [00:03<00:06,  9.65it/s]
Processing AC136431.1--PKD1P5:  35%|███▍      | 36/103 [00:03<00:06,  9.65it/s]
Processing AC136431.1--PKD1P5:  36%|███▌      | 37/103 [00:03<00:06,  9.65it/s]
Processing DYSF--PPP1CB:  36%|███▌      | 37/103 [00:03<00:06,  9.65it/s]      
Processing DYSF--PPP1CB:  37%|███▋      | 38/103 [00:03<00:06,  9.65it/s]
Processing CA8--LINC01301:  37%|███▋      | 38/103 [00:03<00:06,  9.65it/s]
Processing CA8--LINC01301:  38%|███▊      | 39/103 [00:04<00:06,  9.65it/s]
Processing C15orf61--RBPMS2:  38%|███▊      | 39/103 [00:04<00:06,  9.65it/s]
Processing C15orf61--RBPMS2:  39%|███▉      | 40/103 [00:04<00:06,  9.65it/s]
Processing SCARB2--CXCL11:  39%|███▉      | 40/103 [00:04<00:06,  9.65it/s]  
Processing SCARB2--CXCL11:  40%|███▉      | 41/103 [00:04<00:06,  9.65it/s]
Processing RELA--RELA-DT:  40%|███▉      | 41/103 [00:04<00:06,  9.65it/s] 
Processing RELA--RELA-DT:  41%|████      | 42/103 [00:04<00:06,  9.65it/s]
Processing PFN2--RNF13:  41%|████      | 42/103 [00:04<00:06,  9.65it/s]  
Processing PFN2--RNF13:  42%|████▏     | 43/103 [00:04<00:06,  9.65it/s]
Processing ARID3B--AC012378.1:  42%|████▏     | 43/103 [00:04<00:06,  9.65it/s]
Processing ARID3B--AC012378.1:  43%|████▎     | 44/103 [00:04<00:06,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  43%|████▎     | 44/103 [00:04<00:06,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  44%|████▎     | 45/103 [00:04<00:06,  9.65it/s]
Processing PRTG--FER1L6:  44%|████▎     | 45/103 [00:04<00:06,  9.65it/s]       
Processing PRTG--FER1L6:  45%|████▍     | 46/103 [00:04<00:05,  9.65it/s]
Processing AL139042.1--CNR1:  45%|████▍     | 46/103 [00:04<00:05,  9.65it/s]
Processing AL139042.1--CNR1:  46%|████▌     | 47/103 [00:04<00:05,  9.65it/s]
Processing ARPP19--AC009432.1:  46%|████▌     | 47/103 [00:04<00:05,  9.65it/s]
Processing ARPP19--AC009432.1:  47%|████▋     | 48/103 [00:04<00:05,  9.65it/s]
Processing ARPP19--AC022308.1:  47%|████▋     | 48/103 [00:04<00:05,  9.65it/s]
Processing ARPP19--AC022308.1:  48%|████▊     | 49/103 [00:05<00:05,  9.65it/s]
Processing ADAMTS7P4--SNUPN:  48%|████▊     | 49/103 [00:05<00:05,  9.65it/s]  
Processing ADAMTS7P4--SNUPN:  49%|████▊     | 50/103 [00:05<00:05,  9.65it/s]
Processing ETFA--RBPMS2:  49%|████▊     | 50/103 [00:05<00:05,  9.65it/s]    
Processing ETFA--RBPMS2:  50%|████▉     | 51/103 [00:05<00:05,  9.65it/s]
Processing CDKAL1--CDKAL1:  50%|████▉     | 51/103 [00:05<00:05,  9.65it/s]
Processing CDKAL1--CDKAL1:  50%|█████     | 52/103 [00:05<00:05,  9.64it/s]
Processing AC009432.1--IQCH:  50%|█████     | 52/103 [00:05<00:05,  9.64it/s]
Processing AC009432.1--IQCH:  51%|█████▏    | 53/103 [00:05<00:05,  9.64it/s]
Processing AC022308.1--IQCH:  51%|█████▏    | 53/103 [00:05<00:05,  9.64it/s]
Processing AC022308.1--IQCH:  52%|█████▏    | 54/103 [00:05<00:05,  9.65it/s]
Processing AKAP13--ADAMTS7P4:  52%|█████▏    | 54/103 [00:05<00:05,  9.65it/s]
Processing AKAP13--ADAMTS7P4:  53%|█████▎    | 55/103 [00:05<00:04,  9.65it/s]
Processing AKAP13--AKAP13:  53%|█████▎    | 55/103 [00:05<00:04,  9.65it/s]   
Processing AKAP13--AKAP13:  54%|█████▍    | 56/103 [00:05<00:04,  9.65it/s]
Processing CLN6--AL135790.1:  54%|█████▍    | 56/103 [00:05<00:04,  9.65it/s]
Processing CLN6--AL135790.1:  55%|█████▌    | 57/103 [00:05<00:04,  9.65it/s]
Processing CLN6--AL161788.1:  55%|█████▌    | 57/103 [00:05<00:04,  9.65it/s]
Processing CLN6--AL161788.1:  56%|█████▋    | 58/103 [00:06<00:04,  9.64it/s]
Processing USP3--AC019294.2:  56%|█████▋    | 58/103 [00:06<00:04,  9.64it/s]
Processing USP3--AC019294.2:  57%|█████▋    | 59/103 [00:06<00:04,  9.65it/s]
Processing NECTIN4--NECTIN4:  57%|█████▋    | 59/103 [00:06<00:04,  9.65it/s]
Processing NECTIN4--NECTIN4:  58%|█████▊    | 60/103 [00:06<00:04,  9.65it/s]
Processing COBL--GLI3:  58%|█████▊    | 60/103 [00:06<00:04,  9.65it/s]      
Processing COBL--GLI3:  59%|█████▉    | 61/103 [00:06<00:04,  9.65it/s]
Processing ZNF229--AL357052.1:  59%|█████▉    | 61/103 [00:06<00:04,  9.65it/s]
Processing ZNF229--AL357052.1:  60%|██████    | 62/103 [00:06<00:04,  9.65it/s]
Processing PLEKHO2--PBX3:  60%|██████    | 62/103 [00:06<00:04,  9.65it/s]     
Processing PLEKHO2--PBX3:  61%|██████    | 63/103 [00:06<00:04,  9.65it/s]
Processing PLEKHO2--AL589923.1:  61%|██████    | 63/103 [00:06<00:04,  9.65it/s]
Processing PLEKHO2--AL589923.1:  62%|██████▏   | 64/103 [00:06<00:04,  9.65it/s]
Processing SORD--SEMA6D:  62%|██████▏   | 64/103 [00:06<00:04,  9.65it/s]       
Processing SORD--SEMA6D:  63%|██████▎   | 65/103 [00:06<00:03,  9.65it/s]
Processing LCLAT1--HMGB1P25:  63%|██████▎   | 65/103 [00:06<00:03,  9.65it/s]
Processing LCLAT1--HMGB1P25:  64%|██████▍   | 66/103 [00:06<00:03,  9.65it/s]
Processing LCLAT1--RPL30P3:  64%|██████▍   | 66/103 [00:06<00:03,  9.65it/s] 
Processing LCLAT1--RPL30P3:  65%|██████▌   | 67/103 [00:06<00:03,  9.65it/s]
Processing PCLAF--AKAP13:  65%|██████▌   | 67/103 [00:06<00:03,  9.65it/s]  
Processing PCLAF--AKAP13:  66%|██████▌   | 68/103 [00:07<00:03,  9.65it/s]
Processing FGFR1--AC007991.3:  66%|██████▌   | 68/103 [00:07<00:03,  9.65it/s]
Processing FGFR1--AC007991.3:  67%|██████▋   | 69/103 [00:07<00:03,  9.64it/s]
Processing ATF6--UHMK1:  67%|██████▋   | 69/103 [00:07<00:03,  9.64it/s]      
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cat: fusion_report_db/DB-timestamp.txt: No such file or directory