File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d68b14a6a5c1c21e16b9dc3b959aa6/.command.log
Size
3.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-4bcd26-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/08376085cf9a6a477601d3f1ff7279/aih-tih-sc-4bcd26-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/8b43af170440230c7143c7d4d61958/aih-tih-sc-4bcd26-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d68b14a6a5c1c21e16b9dc3b959aa6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d68b14a6a5c1c21e16b9dc3b959aa6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PDXDC2P--PDPR
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TBP--ATXN3
starfusion
AC100821.2--LYPLA1
starfusion
TVP23C--CDRT4
arriba
RBM14--RBM4B
arriba
AC092807.3--DDAH1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba

  0%|          | 0/13 [00:00<?, ?it/s]
Processing PDXDC2P--PDPR:   0%|          | 0/13 [00:00<?, ?it/s]
Processing PDXDC2P--PDPR:   8%|▊         | 1/13 [00:00<00:01,  9.24it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 1/13 [00:00<00:01,  9.24it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 2/13 [00:00<00:01,  9.45it/s]
Processing TBP--ATXN3:  15%|█▌        | 2/13 [00:00<00:01,  9.45it/s]        
Processing TBP--ATXN3:  23%|██▎       | 3/13 [00:00<00:01,  9.47it/s]
Processing AC100821.2--LYPLA1:  23%|██▎       | 3/13 [00:00<00:01,  9.47it/s]
Processing AC100821.2--LYPLA1:  31%|███       | 4/13 [00:00<00:00,  9.51it/s]
Processing TVP23C--CDRT4:  31%|███       | 4/13 [00:00<00:00,  9.51it/s]     
Processing TVP23C--CDRT4:  38%|███▊      | 5/13 [00:00<00:00,  9.52it/s]
Processing RBM14--RBM4B:  38%|███▊      | 5/13 [00:00<00:00,  9.52it/s] 
Processing RBM14--RBM4B:  46%|████▌     | 6/13 [00:00<00:00,  9.51it/s]
Processing AC092807.3--DDAH1:  46%|████▌     | 6/13 [00:00<00:00,  9.51it/s]
Processing AC092807.3--DDAH1:  54%|█████▍    | 7/13 [00:00<00:00,  9.52it/s]
Processing PCDHA10--PCDHAC1:  54%|█████▍    | 7/13 [00:00<00:00,  9.52it/s] 
Processing PCDHA10--PCDHAC1:  62%|██████▏   | 8/13 [00:00<00:00,  9.51it/s]
Processing PCDHA10--PCDHAC2:  62%|██████▏   | 8/13 [00:00<00:00,  9.51it/s]
Processing PCDHA10--PCDHAC2:  69%|██████▉   | 9/13 [00:00<00:00,  9.52it/s]
Processing PCDHA10--PCDHA13:  69%|██████▉   | 9/13 [00:00<00:00,  9.52it/s]
Processing PCDHA10--PCDHA13:  77%|███████▋  | 10/13 [00:01<00:00,  9.53it/s]
Processing PCDHA6--PCDHAC1:  77%|███████▋  | 10/13 [00:01<00:00,  9.53it/s] 
Processing PCDHA6--PCDHAC1:  85%|████████▍ | 11/13 [00:01<00:00,  9.52it/s]
Processing PCDHA6--PCDHAC2:  85%|████████▍ | 11/13 [00:01<00:00,  9.52it/s]
Processing PCDHA6--PCDHAC2:  92%|█████████▏| 12/13 [00:01<00:00,  9.52it/s]
Processing PCDHA6--PCDHA13:  92%|█████████▏| 12/13 [00:01<00:00,  9.52it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 13/13 [00:01<00:00,  9.51it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 13/13 [00:01<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory