File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/46b2584a0748bab28df854d4e426e3/.command.log
Size
5.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f0dbdf-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/46b2584a0748bab28df854d4e426e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/46b2584a0748bab28df854d4e426e3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/de9cc9e9cf742210047c9852203aa4/aih-tih-sc-f0dbdf-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/fc1985bdd5d3321e4962c189bb3f0f/aih-tih-sc-f0dbdf-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AC020899.1--FLT3LG
starfusion
PARD6B--RASSF2
starfusion
arriba
ASAH2B--PRKG1
starfusion
arriba
SFMBT1--RFT1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
GDPD1--SETD2
starfusion
GUSBP13--NAIP
starfusion
SREK1IP1--RGS7BP
arriba
SREK1IP1--MRPL49P1
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
TVP23C--CDRT4
arriba
CSMD3--RNU4-37P
arriba
CSMD3--CSMD3
arriba
TTC39C--ISM1
arriba
TTC39C--AL121782.1
arriba
AC092807.3--DDAH1
arriba
SETD2--CA4
arriba
SORCS1--AL353740.1
arriba
SORCS1--LINC02661
arriba
KLRC4--KLRK1
arriba
CSMD3--LINC02237
arriba

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Processing AC020899.1--FLT3LG:   0%|          | 0/24 [00:00<?, ?it/s]
Processing AC020899.1--FLT3LG:   4%|▍         | 1/24 [00:00<00:02,  9.25it/s]
Processing PARD6B--RASSF2:   4%|▍         | 1/24 [00:00<00:02,  9.25it/s]    
Processing PARD6B--RASSF2:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s]
Processing ASAH2B--PRKG1:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s] 
Processing ASAH2B--PRKG1:  12%|█▎        | 3/24 [00:00<00:02,  9.55it/s]
Processing SFMBT1--RFT1:  12%|█▎        | 3/24 [00:00<00:02,  9.55it/s] 
Processing SFMBT1--RFT1:  17%|█▋        | 4/24 [00:00<00:02,  9.59it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 4/24 [00:00<00:02,  9.59it/s]
Processing TLK2P1--AC110079.1:  21%|██        | 5/24 [00:00<00:01,  9.61it/s]
Processing TLK2--AC240565.1:  21%|██        | 5/24 [00:00<00:01,  9.61it/s]  
Processing TLK2--AC240565.1:  25%|██▌       | 6/24 [00:00<00:01,  9.63it/s]
Processing GDPD1--SETD2:  25%|██▌       | 6/24 [00:00<00:01,  9.63it/s]    
Processing GDPD1--SETD2:  29%|██▉       | 7/24 [00:00<00:01,  9.63it/s]
Processing GUSBP13--NAIP:  29%|██▉       | 7/24 [00:00<00:01,  9.63it/s]
Processing GUSBP13--NAIP:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]
Processing SREK1IP1--RGS7BP:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]
Processing SREK1IP1--RGS7BP:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing SREK1IP1--MRPL49P1:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing SREK1IP1--MRPL49P1:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC1:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]  
Processing PCDHA11--PCDHAC1:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC2:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC2:  50%|█████     | 12/24 [00:01<00:01,  9.65it/s]
Processing PCDHA11--PCDHA13:  50%|█████     | 12/24 [00:01<00:01,  9.65it/s]
Processing PCDHA11--PCDHA13:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]
Processing CSMD3--RNU4-37P:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]
Processing CSMD3--RNU4-37P:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing CSMD3--CSMD3:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]   
Processing CSMD3--CSMD3:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing TTC39C--ISM1:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing TTC39C--ISM1:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing TTC39C--AL121782.1:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing TTC39C--AL121782.1:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s] 
Processing AC092807.3--DDAH1:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing SETD2--CA4:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]       
Processing SETD2--CA4:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing SORCS1--AL353740.1:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing SORCS1--AL353740.1:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]
Processing SORCS1--LINC02661:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s] 
Processing SORCS1--LINC02661:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]     
Processing KLRC4--KLRK1:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing CSMD3--LINC02237:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing CSMD3--LINC02237: 100%|██████████| 24/24 [00:02<00:00,  9.65it/s]
Processing CSMD3--LINC02237: 100%|██████████| 24/24 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory