Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/72209b4527b110bda3491da1d7510c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/22c1c312a741a59ca8bd3cbc27edb6/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/72209b4527b110bda3491da1d7510c/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 294405550
unpaired = 3888721
MERGED PAIRED END READS = 294405550
MATES PROCESSED = 592699821
TOTAL READS     = 298294271
DISTINCT READS  = 1.05856e+08
DISTINCT COUNTS = 2274
MAX COUNT       = 611967
COUNTS OF 1     = 4.69401e+07
MAX TERMS       = 100
OBSERVED COUNTS (611968)
1	46940114
2	24880735
3	13701443
4	7604021
5	4314650
6	2541134
7	1562997
8	1008006
9	677253
10	477849
11	347379
12	261726
13	201694
14	159418
15	128645
16	105997
17	88337
18	74686
19	63706
20	54919
21	47558
22	42091
23	36982
24	32990
25	29362
26	26613
27	23882
28	21457
29	19739
30	17880
31	16487
32	15037
33	14037
34	12809
35	11882
36	11147
37	10405
38	9705
39	9036
40	8463
41	8037
42	7556
43	7159
44	6676
45	6403
46	5990
47	5735
48	5500
49	5232
50	4904
51	4667
52	4481
53	4252
54	4119
55	3794
56	3762
57	3572
58	3526
59	3206
60	3188
61	3049
62	3032
63	2802
64	2683
65	2581
66	2501
67	2305
68	2420
69	2320
70	2197
71	2086
72	2024
73	2018
74	1922
75	1869
76	1928
77	1777
78	1738
79	1721
80	1589
81	1526
82	1520
83	1452
84	1409
85	1351
86	1361
87	1357
88	1284
89	1253
90	1187
91	1201
92	1132
93	1083
94	1160
95	1086
96	1086
97	1023
98	1029
99	1012
100	1003
101	927
102	923
103	896
104	875
105	868
106	831
107	814
108	788
109	788
110	750
111	775
112	752
113	723
114	720
115	747
116	690
117	692
118	670
119	733
120	608
121	640
122	638
123	620
124	526
125	593
126	552
127	588
128	548
129	527
130	540
131	523
132	536
133	499
134	482
135	488
136	466
137	442
138	497
139	501
140	456
141	464
142	457
143	390
144	437
145	429
146	408
147	417
148	418
149	419
150	381
151	393
152	418
153	353
154	358
155	349
156	346
157	328
158	354
159	334
160	336
161	310
162	343
163	338
164	323
165	330
166	299
167	314
168	293
169	285
170	277
171	275
172	286
173	272
174	277
175	241
176	239
177	234
178	245
179	263
180	243
181	279
182	268
183	268
184	236
185	220
186	230
187	233
188	231
189	227
190	209
191	228
192	207
193	206
194	215
195	198
196	210
197	237
198	199
199	206
200	180
201	197
202	206
203	178
204	178
205	185
206	199
207	186
208	196
209	181
210	176
211	203
212	188
213	173
214	165
215	193
216	164
217	163
218	157
219	152
220	135
221	146
222	161
223	154
224	159
225	144
226	170
227	142
228	147
229	159
230	136
231	135
232	141
233	134
234	137
235	159
236	129
237	123
238	135
239	133
240	131
241	130
242	150
243	113
244	116
245	128
246	104
247	118
248	127
249	106
250	121
251	103
252	124
253	107
254	129
255	116
256	118
257	117
258	106
259	113
260	110
261	97
262	126
263	127
264	92
265	108
266	115
267	112
268	103
269	98
270	102
271	98
272	90
273	89
274	107
275	119
276	97
277	87
278	77
279	98
280	99
281	108
282	84
283	92
284	95
285	85
286	89
287	90
288	75
289	99
290	81
291	63
292	83
293	85
294	95
295	95
296	84
297	73
298	95
299	97
300	81
301	79
302	72
303	81
304	79
305	89
306	85
307	92
308	77
309	83
310	69
311	75
312	60
313	68
314	77
315	79
316	72
317	67
318	66
319	81
320	73
321	65
322	60
323	55
324	60
325	58
326	55
327	61
328	64
329	74
330	51
331	71
332	74
333	65
334	51
335	58
336	47
337	58
338	83
339	51
340	59
341	56
342	60
343	47
344	49
345	53
346	55
347	60
348	62
349	43
350	50
351	42
352	53
353	73
354	63
355	63
356	49
357	39
358	60
359	53
360	51
361	40
362	59
363	38
364	41
365	52
366	42
367	57
368	54
369	48
370	42
371	52
372	45
373	57
374	49
375	48
376	41
377	47
378	40
379	54
380	42
381	34
382	45
383	42
384	35
385	50
386	49
387	43
388	50
389	40
390	49
391	48
392	42
393	34
394	34
395	34
396	50
397	47
398	30
399	32
400	51
401	38
402	38
403	33
404	48
405	34
406	33
407	35
408	45
409	31
410	47
411	46
412	39
413	34
414	47
415	34
416	29
417	37
418	42
419	35
420	42
421	35
422	34
423	36
424	35
425	30
426	35
427	32
428	22
429	40
430	23
431	28
432	32
433	23
434	34
435	24
436	31
437	30
438	28
439	33
440	42
441	27
442	36
443	24
444	32
445	25
446	20
447	35
448	36
449	36
450	39
451	23
452	26
453	32
454	28
455	22
456	24
457	30
458	32
459	25
460	26
461	27
462	36
463	25
464	25
465	35
466	25
467	31
468	26
469	31
470	28
471	33
472	32
473	25
474	28
475	24
476	25
477	25
478	31
479	23
480	20
481	22
482	22
483	27
484	19
485	25
486	30
487	25
488	20
489	26
490	22
491	16
492	19
493	25
494	22
495	31
496	32
497	21
498	26
499	26
500	24
501	27
502	26
503	30
504	23
505	23
506	12
507	20
508	20
509	21
510	33
511	15
512	20
513	23
514	21
515	20
516	26
517	18
518	20
519	27
520	20
521	22
522	23
523	19
524	21
525	23
526	24
527	19
528	19
529	17
530	25
531	23
532	18
533	18
534	24
535	24
536	19
537	24
538	21
539	18
540	27
541	21
542	23
543	13
544	34
545	27
546	24
547	22
548	17
549	19
550	14
551	14
552	21
553	12
554	22
555	19
556	24
557	22
558	18
559	21
560	22
561	17
562	16
563	11
564	13
565	19
566	23
567	11
568	13
569	9
570	19
571	22
572	24
573	23
574	19
575	17
576	15
577	13
578	17
579	19
580	19
581	19
582	9
583	18
584	19
585	14
586	13
587	23
588	18
589	20
590	18
591	15
592	15
593	18
594	13
595	16
596	13
597	15
598	19
599	15
600	9
601	10
602	10
603	17
604	14
605	17
606	14
607	9
608	16
609	11
610	19
611	13
612	18
613	15
614	15
615	17
616	15
617	16
618	11
619	19
620	10
621	13
622	22
623	13
624	15
625	14
626	19
627	20
628	18
629	19
630	15
631	15
632	14
633	16
634	14
635	18
636	17
637	6
638	14
639	15
640	7
641	15
642	11
643	17
644	12
645	10
646	16
647	9
648	9
649	15
650	17
651	14
652	10
653	11
654	10
655	18
656	14
657	10
658	15
659	9
660	15
661	15
662	19
663	6
664	9
665	13
666	14
667	9
668	14
669	9
670	16
671	7
672	13
673	7
674	12
675	7
676	13
677	7
678	8
679	11
680	12
681	7
682	13
683	12
684	18
685	8
686	9
687	19
688	8
689	10
690	8
691	8
692	14
693	6
694	12
695	10
696	9
697	13
698	11
699	10
700	9
701	7
702	7
703	10
704	18
705	6
706	9
707	11
708	10
709	7
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720	14
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722	9
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725	4
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727	11
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730	11
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737	15
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740	12
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744	5
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765	7
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785	11
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790	11
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793	7
794	8
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796	6
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798	11
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805	7
806	15
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817	12
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846	6
847	8
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864	9
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896	12
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978	2
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980	3
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987	2
988	3
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1000	6
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1016	5
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1101	8
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1111	7
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1800	1
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1914	1
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1918	1
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1933	2
1935	2
1940	1
1941	1
1945	1
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1953	3
1960	1
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1964	1
1966	3
1967	3
1970	2
1971	1
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1974	2
1975	1
1977	1
1980	1
1981	1
1982	1
1983	1
1984	1
1993	2
1994	2
1998	1
2000	1
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2003	1
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2013	1
2016	1
2018	1
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3608	1
3612	1
3621	1
3636	1
3637	2
3647	1
3650	1
3656	1
3668	1
3670	1
3677	1
3684	1
3698	2
3727	1
3732	1
3752	1
3776	1
3777	1
3782	1
3792	1
3798	1
3808	1
3821	1
3827	1
3869	1
3902	1
3908	1
3915	1
3916	1
3924	1
3929	1
3931	1
3944	1
3979	1
3992	1
3996	1
4007	1
4025	1
4046	1
4055	1
4057	1
4085	1
4167	2
4180	1
4193	1
4194	1
4198	2
4201	1
4206	1
4214	1
4231	1
4286	1
4303	1
4324	1
4328	1
4342	1
4368	1
4432	1
4526	1
4562	1
4564	1
4602	1
4643	1
4647	1
4654	1
4670	1
4690	1
4703	1
4728	1
4729	1
4731	1
4734	1
4750	1
4769	1
4785	1
4824	1
4831	1
4864	1
4866	1
4870	1
4896	1
4907	1
4919	1
4931	2
4983	1
5041	1
5049	1
5082	1
5084	1
5099	1
5120	1
5160	1
5195	1
5214	1
5241	1
5325	1
5402	1
5405	1
5407	1
5460	1
5482	1
5574	1
5579	1
5688	1
5710	1
5789	1
5806	1
5881	1
5889	1
5925	1
5927	1
5986	1
6046	1
6076	2
6156	1
6210	1
6262	1
6301	1
6314	1
6363	1
6528	1
6628	1
6781	1
6970	1
6982	1
7090	2
7125	1
7198	1
7380	1
7396	1
7463	1
7602	1
7695	1
7728	1
7786	1
7828	1
7846	1
8115	1
8262	1
8446	1
8624	1
8663	1
9080	1
9419	1
9671	1
9713	1
10391	1
10711	1
11451	1
11482	1
12380	1
12406	1
13837	1
13941	1
14687	1
15694	1
16533	1
16700	1
19353	1
32021	1
34346	1
611967	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]