File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/29f7ee9b12b6c57118986fca0ec249/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (aih-tih-sc-3abdf4-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/bbfd192fd73d639c632f8a3a6820f3/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/29f7ee9b12b6c57118986fca0ec249/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/29f7ee9b12b6c57118986fca0ec249/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/12d0606c9bb9a28601241c8b1866ae/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: aih-tih-sc-3abdf4-R1_A23YTGFLT4_1/abundance.h5
Successfully converted aih-tih-sc-3abdf4-R1_A23YTGFLT4_1/abundance.h5 to aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_kallisto_mqc.tsv
  Sample: aih-tih-sc-3abdf4-R1_A23YTGFLT4_1
  Mean Fragment Length: 127.7 bp
  Median Fragment Length: 119.0 bp
  pct_mito_est_counts: 0.023%
  pct_ribo_est_counts: 0.694%
  pct_hk_est_counts: 0.309%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.049%
  pct_ribo_tpm: 2.119%
  pct_hk_tpm: 0.475%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.04%