Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9ff7d993bff5316a0d1fde84300ac1/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/866db39a14271641c5eb30ed6f8ec5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/866db39a14271641c5eb30ed6f8ec5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a3d6247466bac9ff49aca312dfb9cd/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 222767920
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	222767920
Known Splicing Events:	220489398
Partial Novel Splicing Events:	1233476
Novel Splicing Events:	931523
Filtered Splicing Events:	113523

Total splicing  Junctions:	474341
Known Splicing Junctions:	253708
Partial Novel Splicing Junctions:	117365
Novel Splicing Junctions:	103268

===================================================================
Create BED file ...
Create Interact file ...