Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4c4ac6f1b24187d163808f1f5d5769/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/c4094dc2682afc05c42038b9c2fa45/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/13e09fc7cafcd21771ec686a90bdf2/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/13e09fc7cafcd21771ec686a90bdf2/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PRSS27--TPSB2
starfusion
AC013268.1--MALL
starfusion
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
STON1--GTF2A1L
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
GTF2A1L--STON1-GTF2A1L
arriba
0%| | 0/21 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 0%| | 0/21 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 5%|▍ | 1/21 [00:00<00:02, 9.26it/s]
Processing TLK2--AC240565.1: 5%|▍ | 1/21 [00:00<00:02, 9.26it/s]
Processing TLK2--AC240565.1: 10%|▉ | 2/21 [00:00<00:02, 9.49it/s]
Processing PRSS27--TPSB2: 10%|▉ | 2/21 [00:00<00:02, 9.49it/s]
Processing PRSS27--TPSB2: 14%|█▍ | 3/21 [00:00<00:01, 9.56it/s]
Processing AC013268.1--MALL: 14%|█▍ | 3/21 [00:00<00:01, 9.56it/s]
Processing AC013268.1--MALL: 19%|█▉ | 4/21 [00:00<00:01, 9.60it/s]
Processing PCDHGB2--PCDHGC3: 19%|█▉ | 4/21 [00:00<00:01, 9.60it/s]
Processing PCDHGB2--PCDHGC3: 24%|██▍ | 5/21 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 24%|██▍ | 5/21 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 29%|██▊ | 6/21 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 29%|██▊ | 6/21 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 33%|███▎ | 7/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 33%|███▎ | 7/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 38%|███▊ | 8/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 38%|███▊ | 8/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 43%|████▎ | 9/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 43%|████▎ | 9/21 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 48%|████▊ | 10/21 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 48%|████▊ | 10/21 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 52%|█████▏ | 11/21 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 52%|█████▏ | 11/21 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 57%|█████▋ | 12/21 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 57%|█████▋ | 12/21 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 62%|██████▏ | 13/21 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 62%|██████▏ | 13/21 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 67%|██████▋ | 14/21 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 67%|██████▋ | 14/21 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 71%|███████▏ | 15/21 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 71%|███████▏ | 15/21 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 76%|███████▌ | 16/21 [00:01<00:00, 9.65it/s]
Processing STON1--GTF2A1L: 76%|███████▌ | 16/21 [00:01<00:00, 9.65it/s]
Processing STON1--GTF2A1L: 81%|████████ | 17/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 81%|████████ | 17/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 86%|████████▌ | 18/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 86%|████████▌ | 18/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 90%|█████████ | 19/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 90%|█████████ | 19/21 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 95%|█████████▌| 20/21 [00:02<00:00, 9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 95%|█████████▌| 20/21 [00:02<00:00, 9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 21/21 [00:02<00:00, 9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 21/21 [00:02<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory